Alteromonas mediterranea DE: MADE_1004470
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Entry
MADE_1004470 CDS
T00747
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
amc
Alteromonas mediterranea DE
Brite
KEGG Orthology (KO) [BR:
amc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amc03400
]
MADE_1004470
DNA repair and recombination proteins [BR:
amc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MADE_1004470
Archaeal homologous recombinant proteins
MADE_1004470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_21
AAA_29
ABC_tran
nSTAND3
NTPase_1
SMC_N
AAA_22
AAA_25
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEA97042
UniProt:
F2GB01
LinkDB
All DBs
Position
965521..969252
Genome browser
AA seq
1243 aa
AA seq
DB search
MKMRILTLRLKNLNALKGEWKIDFTQSPFIDNGLFAITGPTGAGKTTLLDAICLALYHQT
PRLGPISTSNNDIMTRGTAECLAEVEFDIKGKAYRAFWSMRRARGKVDGNLQSADVELAE
VESGDVLATQVRPKNEEIEKLTGLNFARFTKSMMLSQGDFAAFLNANEGDRAELLEELTG
TEIYGQISQAVHQQFSEAKQKKKEFAIKLEGVTLLSNEQITQLEEDQDGINGQVAAFNQT
LTELQQQQQWQQSFNTNALALKEAKEAQLAANNAIDEAKQELNVLTHSEPAEKLRLPFLQ
RNGLQQDLSGYKEKLNEKAAQLPELKTQKEQLSSEVTNAERALLQTKQQSSELEKRINEQ
VVPLDNNIAQSTAAQQKANDSAAQFTRSINALTKKRTEIENASADNKKKLGELEAYLNEN
HSLSSMAEFISGWSETARHIESEQKQIATLKQSAQEHRHALSSIDEAITQTNQALKTLTQ
TFDNATANVATCEEALNAALSNADKNSATSKTSLQQERDTKLHHWDNLIQIGHIQQQYLA
LEQDKVSLSAQKEDLSKKLAQQQSDRQALVDAYKQTRSNLKDIEALIALDAEVAHLRAQL
KSGEPCPVCGANEHTTASVAIDIPETVQKRDSLKEQLDDIEQQGAQAKESVTHTELTLTQ
VNKQLDQTNAKRDALVEKWKQFSSVLSADISSFEKVDINTSQSVAQFTEQFKTRLDDISA
QLTRIEQCEQALNTAMQSKNEAQQALQAKQSDVAVSMQRRETLEKQLTERNAEVENKTKG
VNDSIATLRETMTAHGAEVHNLPIEGIATWLNEEAEALKTYKHNHQLHTNLNEELQEVSR
TLLVLNRDIESAETQLKSVSEELMQLDSTLIELRKSRMAVFPEGNISEVRSKASAAQVQA
EQKLSECQSRLHQTDTILSRLEAEIAQLNEQIREKEQALTEATENFNRQLANSPFADEQA
FSNALLDEETRNKLLELQKQLTQQKQQADLKLENALATQQSLTARDHAQQWQRKLEEHGM
QWVENQITEQAQQKDALLSTLGQIKQQLNANNEAREKQRTLVEEMAAFETYYDDITYLHS
LIGSASGDKFRRFAQGLTLDNLVQLANQQLEKLHGRYQLIRKENDGLGLSVLDTWQGDVV
RDTKTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDVALDALDNLN
ASGKMIGVISHIEAMKERIPTQLKVIKRNGVGLSALEKPYAVG
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaatgagaatattgaccttacgccttaaaaatttaaatgcccttaaaggggagtgg
aagatagatttcactcagtcaccctttatcgacaacggcttgtttgccattactggccca
accggtgcgggtaaaaccaccctgctcgatgcaatatgtttagctttatatcaccaaacg
cctcgacttgggcctatatcaacgtcgaacaacgacattatgactcgcggtacagcggag
tgtttggcggaagttgagtttgatattaagggtaaagcgtaccgtgcgttttggagcatg
cgccgcgccagaggaaaagttgacggtaatctgcaaagtgccgatgttgagctggctgaa
gttgaaagtggcgatgtgctagcaacccaagttcgccctaaaaatgaagagatagaaaag
ctcactggtctgaactttgcgcgcttcacaaaatctatgatgttgtcgcagggcgacttt
gctgcctttctaaatgccaatgaaggcgacagggctgagttacttgaagaactaactggt
actgaaatctatgggcaaatatcacaagcagtacatcagcaatttagcgaggctaaacaa
aagaaaaaagaattcgcgataaagcttgaaggggtaacgttacttagcaatgagcaaatt
acccagttggaagaagatcaagacggtattaatggtcaagttgcggcgtttaaccaaaca
cttactgaactacaacagcaacagcaatggcaacaatcattcaacaccaatgcactcgcg
cttaaagaggcgaaagaagcacagcttgctgcgaataatgcgatcgatgaggcgaaacaa
gaacttaatgtgctaactcacagtgagcccgccgaaaagcttcgcctcccttttttgcag
cgaaacgggcttcagcaagacctatcaggctacaaagaaaagctcaatgaaaaagcggct
cagcttcccgaattaaaaacgcaaaaagaacagcttagctcggaagtgaccaatgctgaa
cgagcgctacttcaaactaagcaacaaagcagtgaacttgaaaagcgcataaacgagcag
gtcgttccgttagataataatatagcgcagagtacagccgcccaacaaaaagcaaatgac
agcgctgcgcagtttacgcgctccataaatgcgctaactaaaaagcgtacagaaatagaa
aatgcgtcagccgataacaagaaaaaattgggtgaattagaagcctacctaaatgaaaac
cactcactcagcagtatggccgagtttatcagcggttggagtgaaactgcgcggcatatt
gagagcgaacagaagcaaatagcgacacttaaacaaagcgcccaagagcaccgccacgcg
ctttcctcaattgatgaagctattacacaaacgaatcaggcgctgaaaacattaacgcaa
acttttgataatgcaaccgccaacgtcgccacttgtgaagaggcgttaaatgctgcgctt
tctaacgccgataaaaatagcgcaaccagtaaaacaagtcttcaacaagagcgggatacc
aagcttcatcactgggacaacctgattcagataggtcatattcaacagcaatatttggca
ctagagcaagacaaagtatcgctgagtgcacagaaggaagacttatcgaaaaaactagcg
cagcagcaatctgaccgacaagccttggttgacgcctacaaacaaacacgcagtaattta
aaagacatagaggcgctgatcgccctagatgctgaagtggcacacctgcgcgcccagcta
aaaagtggcgagccatgtccggtatgtggagctaacgagcacactacggctagcgtggcg
attgatatacctgaaactgtacaaaagcgtgacagcttaaaagagcagttagatgatatt
gagcaacaaggagcacaggcaaaagaaagcgttacacacactgagttaacccttacccag
gttaataagcagctagaccaaacaaacgcaaaacgcgatgcgttggtagaaaagtggaag
cagttttcaagcgtacttagcgctgatatatctagctttgaaaaagtcgacattaataca
tcacaaagtgtcgcccaatttaccgagcagtttaaaacccgtcttgatgacattagtgcc
cagttaacgcgcatagagcagtgtgagcaagcattaaatactgcaatgcagagtaaaaat
gaggcgcaacaagcgttgcaagccaaacagtcagatgttgccgttagcatgcagcggcgc
gaaacattggaaaagcaactcaccgaacgcaacgcagaagtagagaacaaaactaaaggg
gttaacgacagcattgcaacacttcgtgagactatgacggcgcacggtgctgaagttcac
aacctgcctattgaaggaattgctacgtggttaaatgaagaagccgaagcgctcaaaact
tataaacacaatcatcaactgcacaccaaccttaatgaagagctacaagaggtgagtcgt
accttgcttgtactaaaccgtgatattgaaagtgcagaaacacagcttaaaagcgtatct
gaagaactcatgcagctagatagcacgctgatagaactgcgcaaatcacgtatggcggta
ttccctgaaggtaatatttcagaagtaaggagtaaagcaagcgccgcccaagtacaggct
gagcaaaaattgagtgaatgccaatctcgcttgcaccaaacggatactattttgtctcgg
ttagaagcagaaattgcccagcttaatgagcaaatacgcgagaaagagcaggcacttaca
gaggcgactgagaactttaatcgccagctagcaaacagcccatttgccgatgagcaagcg
tttagcaatgcgctactagatgaagaaacccgtaataagttgcttgagctgcaaaagcaa
ttaacgcagcaaaaacaacaggctgaccttaaactagaaaacgcgctagcgacacagcaa
tcgctaacagcgcgtgaccatgcacagcagtggcagcgcaagctagaagaacatggtatg
cagtgggttgaaaatcaaattaccgagcaagcgcaacaaaaagacgctttgttatccacc
ctagggcaaattaaacagcagttaaacgccaataatgaagcccgtgaaaagcaaaggacg
ctggtagaagagatggccgcgttcgaaacctattacgatgatattacttacctgcattcg
ttgattggttcggcaagcggtgacaaattcagacgttttgcacaagggcttacgctggac
aaccttgtccaacttgctaaccagcagctagaaaagttgcacggtcgctatcagcttatt
cgcaaagaaaacgacgggctaggcttaagtgttttagatacttggcaaggagacgtggta
cgcgataccaaaacgctgtcgggtggagaaagcttcttagtgagccttgcgctggcattg
gcgttatctgacctggtaagtcacaaaaccagtatcgattcactatttttagatgaaggc
tttggaacccttgatgctgaaaccttagatgtggccctcgatgcgctagacaacttaaat
gccagtggaaaaatgattggcgtcataagccatatcgaggccatgaaagagcgaattcct
actcaacttaaagtaattaaacgcaacggtgtgggcttaagtgcactagaaaagccttat
gcggtggggtga
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integrated database retrieval system
