Alteromonas mediterranea DE: MADE_1004665
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Entry
MADE_1004665 CDS
T00747
Name
(GenBank) RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
amc
Alteromonas mediterranea DE
Brite
KEGG Orthology (KO) [BR:
amc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
amc03009
]
MADE_1004665
Enzymes [BR:
amc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MADE_1004665
Ribosome biogenesis [BR:
amc03009
]
Prokaryotic type
rRNA helicases
MADE_1004665
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AEA97079
UniProt:
F2GBS8
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All DBs
Position
complement(1004324..1005550)
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AA seq
408 aa
AA seq
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MTFEELELDDALCHAAADMGFEAPTNIQELVIPHALDGRDILASAPTGTGKTAAFLLPAC
QFLLDYPRKQPGATRILILTPTRELALQVYEQAVAITKHTQLVCGVITGGINYGTDKETL
SKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQIAAEARWRKQ
NLLFSATLEGKGVKTFAHDILNNPEIVEANPSRKEKNKIHQWYHLADDMNHKQALLVNIL
KQETTTSAVVFVKTRDRLQMLKDFLASQDIQVCWLQGEMPQDKRNAAMARFKNGEVPILL
ATDVAARGIDVPNVSHVINFDMPRKADIYVHRIGRTGRAGAKGTAISLVEAHDFEMVTKA
ARYMGEPLKARVIDELRPKNKTPKIGPKKKKVKAKDKTKAKAKPKKKK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgaagaactcgaattagacgatgcgctgtgtcacgcagcagcagatatgggg
tttgaagctccaactaacattcaagaattggtgatcccacacgcgctagacggccgagat
attttagcgtctgcgccaactggtacaggtaaaaccgctgcattcttattgccagcctgt
cagtttttactcgactacccgcgcaaacagccgggtgcgacacgtattttgatcttaacg
ccaacccgcgaactggctttgcaggtttacgagcaagcggttgccattaccaagcacacc
cagcttgtgtgtggagtaattactggcggtattaactacggcacagataaagagacgctt
agcaagaacttagatattcttgtcgccacaccaggccgtcttcttgaacacattgaaaaa
gaagcggcagactgtcgcgatattgaatgtttaattcttgatgaagccgaccgtatgctg
gatatgggcttctcgactgtggtgaaccaaattgcggcggaagcgcgctggcgcaagcag
aacctgctgttctcggccacccttgaaggtaaaggtgttaagaccttcgctcacgacatt
cttaataaccctgaaattgttgaagcaaacccgtcacgcaaagagaagaataaaattcac
cagtggtatcaccttgctgatgacatgaaccacaagcaagctcttctggtgaacatattg
aagcaggaaactacaacatcggcggtggtatttgtaaaaacccgcgaccgcctgcaaatg
ctaaaagactttctagcttcacaagatattcaggtgtgctggttacaaggtgaaatgccg
caggacaaacgcaacgccgctatggcccgctttaaaaatggcgaagtccctattttgtta
gcgactgatgtagctgcccgtggcattgacgtgccaaacgtcagtcatgttattaacttt
gatatgccgcgcaaagccgatatttacgttcaccgtattggtagaaccggccgcgcaggc
gctaaaggcacggctatttcactggttgaagcacacgactttgaaatggtaaccaaagca
gcgcgttacatgggcgagcctttaaaagcccgtgttatcgacgagctacgccctaaaaac
aaaacgcctaaaattggcccgaaaaagaaaaaagtgaaggccaaagataaaactaaggcg
aaagccaagcctaagaagaaaaagtaa
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