Alteromonas mediterranea DE: MADE_1008535
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Entry
MADE_1008535 CDS
T00747
Name
(GenBank) RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
amc
Alteromonas mediterranea DE
Brite
KEGG Orthology (KO) [BR:
amc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amc03019
]
MADE_1008535
Enzymes [BR:
amc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MADE_1008535
Messenger RNA biogenesis [BR:
amc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MADE_1008535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
ResIII
nSTAND3
HA2_N
NACHT
T2SSE
RsgA_GTPase
NTPase_1
SLFN-g3_helicase
DUF4028
PhoH
AAA_23
Zeta_toxin
SRP54
Nse4_C
Motif
Other DBs
NCBI-ProteinID:
AEA97847
UniProt:
F2G9G8
LinkDB
All DBs
Position
1860874..1864902
Genome browser
AA seq
1342 aa
AA seq
DB search
MSSPIAIKPLYNKLDDCLSADKFRLKRRITLLAQKAKGLGESKGAAPGDKSEASKRKALG
GSTSHSANKGSQKNAQKSAEESLSTQFEKLKADINGSIEKRNWRKANLPKVEYPPLPVSD
KKEDIKDAIANNQVVIVAGETGSGKTTQLPKICLELGLGVNGMIAHTQPRRLAARSVATR
IAEELNTPLGEKVGFKIRFSDQVSERSYVKLMTDGMLLAEMQQDRFLNQYDTIIIDEAHE
RSLNIDFLLGYLRQLLHKRPDLKLIITSATIDPERFSKHFNNAPIIEVSGRTYPVEVRYH
APEDFDEDRDQSDAIIHAVDELMREAPGDILVFLSGEREIRDTQDALSKQHYRNTEIVPL
YARLSAAEQNRIFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGFARISRYSARSKVQRL
PIEPISQASANQRAGRCGRVSDGICIRLYSEDDYLGRPEFTDPEILRTNLASVILQMLAL
GLGDIAAFPFVQPPDNRNINDGFRLLEEIQAIGKGKGKQKGKMQLTPLGRQIARLPIDPR
YARMVIEAERTNALSEVMVIAAGLSIQDPRERPQEKRQQADEKHSEYQDKDSDFISLYNV
WVAFREQQNASSQNQLRKWCKQQFINYLRMREWQDIVSQLKKSIAELGFGISKQEADYQS
IHQAIASGLLSHMGFKDKEREYMGSRNSRFLIFPGSGLSKSQPKWVMAAELVETSKLFAR
MVAKIDPTWVEPLAEHVVQRSYSEPHWSKKRGAVIAFEKVTLFGLPIVMKRAKVYSLIDP
PICHELFIREALVEGNTKLNYSFLEENQALLEQADEFEQKTRRRDLIVDDEELVSFYAKR
IPLEANNDAAFKKWFRQHGSNDSLTFKEEDVYRQQPGQSVANAFPDVWRQGNITLPLRYN
FEPNAVDDGVTVVIPLPVLNQVDNIGFDWLVPGLRHDLIVGLIKALPKRLRRNFVPAPNF
AEACLADISETDKNNRPVPLLEAVTDKLRKMTGVIIESDEWNLAQLDKHLKMHFAVVNDN
GDDIAKGDDLHALKQQCAGQVKQTFEKAATPELERSNIEQWDFESLPETFVQKVGGFEVQ
AFPALVEKGDKVDIALIEEADKAQALHKQGVNVLIKNAMPSPLNYLQSKLPNKAKLGLYF
NPFGQVKALIDDCIFAGIDAIVTDYCEANKTDIRNKADFEACLDIARASINDKVLEIAKQ
VEQGLTLAHQCQKQMKGNVPLTMINALGDCKAHLAQLVFPGFVSQIGEARLDDWNRYIKG
LARRLEKLPIDPNKDRMHQVTVEKSTKEWEKTCSKYPKGKVPQALLDVRWMIEELRVSLF
AQQLGTAYPISAKRITLHLAEY
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttcaccaatcgcgataaaacccctctacaataaacttgatgattgtttaagcgcc
gataagtttcgcttgaagcgccgcattacgctgcttgcacaaaaagcaaaggggttaggt
gagtctaaaggcgcggcaccgggtgacaaaagcgaggcttcaaaacgcaaagcgctcggg
ggtagtacgtcgcatagcgcaaataaaggaagtcagaaaaacgcacaaaaatcggccgaa
gaaagtttaagcacgcagtttgaaaaacttaaagcagacatcaatgggtcaattgaaaag
cgcaactggcgtaaagccaacctaccaaaggtagagtatccaccgctaccggtaagcgat
aaaaaagaagatattaaagacgccatagccaacaatcaggttgtgattgttgcgggtgaa
actggctcgggtaaaaccactcagctgcctaaaatatgcttagaactaggtttaggtgtg
aatggcatgattgcccatacgcagccgcgtcgtcttgctgctagaagtgtggctacccgt
attgcagaagagcttaatacgccattgggcgaaaaagtgggctttaaaattcgctttagc
gatcaggtgagtgaacgcagttatgtaaagctaatgacagacggtatgctgctcgcggaa
atgcagcaagaccgttttttaaatcaatacgatacaattattatcgatgaagcccacgaa
cgaagcttaaatatcgactttttgctcggctatcttagacagctgttacataagcgccct
gatctcaagcttatcatcacctcagcgaccatcgacccagagcggttctctaagcatttt
aataacgcacctattattgaagtaagtggccggacttatccagttgaggttcgctatcac
gcccctgaagactttgatgaagatcgcgatcaaagcgatgctattattcatgccgttgac
gagcttatgcgtgaagcgccaggcgatatcttagtatttttaagtggcgaacgtgaaata
agagacacccaagatgcgctcagtaagcagcattatcgcaatactgaaatcgtgcctctt
tatgcgcggctatccgccgccgagcaaaaccgcatttttcagtcccatagcggcaggcgc
attgtgcttgctacgaacgtggctgaaacgtcgttaacggtgcctggtattaagtatgtt
atcgaccctggtttcgcccgtatttcgcgatacagtgcaagaagtaaagtgcagcggctg
ccgatagagcctatttcgcaggcctctgcgaatcagcgggcagggcgatgcggccgtgtt
tcagacggtatttgtattcgcttgtacagcgaagatgactaccttggtcgtccggagttt
actgaccctgaaattctgcgtacgaatttagcatcagtcattttgcaaatgttagcgttg
gggctaggcgatattgctgcgtttccatttgttcagccacccgacaaccgcaatattaac
gatggttttcgcttgcttgaggaaattcaggcaattggtaaagggaaaggtaaacaaaaa
gggaaaatgcagcttacgccacttggcagacagatagctaggctgcccattgacccgcgt
tatgcacgcatggtgattgaagctgagcgaacgaatgcgcttagtgaagtcatggttatt
gctgcgggcttgtcgattcaagacccgcgagagcgccctcaggaaaagcgccagcaagct
gacgaaaagcacagtgaatatcaagataaagactctgactttattagcctttacaacgtg
tgggtagcgtttagagagcagcaaaatgcgtcaagccaaaaccagctgcgcaaatggtgt
aagcagcagtttatcaactacctacgtatgcgcgaatggcaagacattgttagccagctt
aaaaagtcgattgccgagcttggctttggtatttcaaagcaagaagcggattatcaatct
attcaccaagctatcgccagcggcctgctttcacatatgggctttaaagataaagagcgc
gagtatatggggtcgcgtaactctcgctttttaatctttccagggtcaggtttgtcgaag
tcgcagccaaagtgggtcatggcggcagagctggtggaaacctctaaattgtttgcgcgc
atggtggcaaaaattgaccctacctgggtagagcctttagccgagcacgtggtacagcga
agctactcagagcctcactggtctaaaaagcgcggtgcggttatcgcctttgaaaaagtt
acgctgtttggtctgccgatagtcatgaagcgggccaaggtgtacagcctaatcgaccca
ccaatttgccacgagttgtttattcgtgaagccctggttgaaggtaatactaagctaaac
tacagcttccttgaggagaatcaggcgctactagagcaagcggatgaatttgagcaaaag
acccgtcgtcgcgatttgattgtggatgacgaagagcttgtgagcttttacgccaaacgt
atcccacttgaggcaaacaacgatgcggcttttaagaagtggttcagacagcacggcagc
aacgacagcctaacgtttaaggaagaggatgtttatcgtcagcagccaggtcagtcagtg
gccaatgcatttcccgacgtatggcgacagggcaatattacactgccgctgcgctataat
tttgagccaaacgctgtcgatgacggggtgactgtagtgatcccgctacccgtattaaac
caggtcgataacattggtttcgattggttagtaccggggttaagacacgacttaattgta
gggttaatcaaggccctgcccaaacgcttgcgccgtaactttgtaccagctcctaatttc
gccgaggcctgtctagctgatatcagtgaaacggacaaaaacaaccggcctgtgcccttg
cttgaagccgtaaccgataagcttcgcaaaatgacaggcgtcattattgaaagcgatgag
tggaacctagcccagcttgataagcatttaaaaatgcatttcgcagtggtgaacgacaac
ggggacgatattgcaaagggtgacgacctacacgcccttaaacagcagtgtgcagggcag
gtaaaacaaacctttgaaaaagcggcaacgcccgagttagaacgcagcaacatagagcag
tgggactttgaaagcttgcccgaaacttttgtgcagaaggtgggcgggtttgaagtacaa
gcattccctgcgttggttgaaaagggcgataaagttgatattgcgcttatagaggaagcg
gataaagcgcaagccttacacaaacaaggcgtgaatgtattaattaaaaatgccatgcca
tcgccgcttaattacttacagagtaaactgcccaataaagcaaaactaggcctttatttt
aacccgtttggccaagttaaagcgttaattgacgattgtatttttgcgggtatcgatgcc
attgtgacagactactgcgaagcgaataaaaccgatattcgcaacaaggccgacttcgaa
gcctgtctagatattgcccgggcaagcattaacgataaggtgcttgaaattgctaaacaa
gtagagcaggggctcacgcttgctcatcaatgccaaaagcaaatgaaaggcaatgtgcca
ttaaccatgatcaatgcgctaggcgactgtaaagcgcatctggcgcaattagtatttcca
ggctttgtctcacaaataggtgaagcaagacttgatgattggaatcgttacatcaaaggg
ttggcaagacgactagaaaaactacccattgatcctaacaaagacagaatgcatcaggta
acggtggaaaaatcgacgaaagaatgggaaaaaacctgtagtaaataccctaagggtaaa
gtgccgcaagcgctattagacgtacgttggatgatagaagaactgcgtgtttcactgttt
gcacagcaactgggtacggcgtatcccatatcagcgaaacgcatcacactgcatttagca
gagtattag
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