Amycolatopsis mediterranei U32: AMED_0006
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Entry
AMED_0006 CDS
T01269
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
amd
Amycolatopsis mediterranei U32
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amd03032
]
AMED_0006 (gyrB)
03400 DNA repair and recombination proteins [BR:
amd03400
]
AMED_0006 (gyrB)
Enzymes [BR:
amd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
AMED_0006 (gyrB)
DNA replication proteins [BR:
amd03032
]
Prokaryotic type
DNA Topoisomerases
AMED_0006 (gyrB)
DNA repair and recombination proteins [BR:
amd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AMED_0006 (gyrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ADJ41832
LinkDB
All DBs
Position
6668..8635
Genome browser
AA seq
655 aa
AA seq
DB search
MTENKHEYNASSITVLEGLEAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEAMAGHATK
VEVTLLADGGVRVVDDGRGIPVDMHPKEQKPTLEVVLTVLHAGGKFDSDSYAVSGGLHGV
GVSVVNALSKKLLAEVKYGGRSWRQEYTDQIPGPLEDLGPASETGTTITFWADGDIFETT
TYNFETISRRLQEMAFLNKGLTLSLRDERVADEEAEADAEGKVARVKEKTYCYPGGLEDF
VKHINGSKDPIHSSVISFEAKGTGLEVEVAMQWNNGFTPSVYTFANTINTHEGGTHEEGF
RAALTRVVNTYARDKKLLKEKDTNLTGDDVREGLAAIVSIKLSEPQFEGQTKTKLGNSEA
KTFVQQTSNEWLADWFERNPTEAKTIINKSISSAQARMAARKARDLVRRKGALDIGGLPG
KLKDCRSTKPEECELYIVEGDSAGGSAKEGRDSMYQAILPIRGKIINVEKARIDRVLKNT
EVQSLITALGTGIHDEFDLEKLRYHKIVLMADADVDGQHITTLLLTLLFRFMTPLIEHGH
VFLSRPPLYKIKWPRAEPEYAYSDRERDAVIQAGVEAGKRLPKDDAIQRYKGLGEMNAEE
LWETTMDPANRLLGQVTLDDAAQADELFSVLMGEDVEARRSFITRNAKDVRFLDV
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgagaacaagcacgagtacaacgcgtcgtcgatcacggtgctcgaaggcctcgaa
gcggtccgcaagcgccccggcatgtacatcggttccaccggtgaacgcggcctgcaccac
ctcgtccaggaggtcgtcgacaactccgtcgacgaggcgatggccgggcacgccaccaag
gtcgaggttaccctcctcgccgacggcggcgtccgcgtcgtcgacgacggccgcggtatc
ccggtcgacatgcaccccaaggagcagaagccgaccctcgaggtcgtgctcaccgtcctc
cacgcgggcggcaagttcgacagcgactcctacgcggtgtccggcggcctgcacggcgtc
ggtgtctcggtggtgaacgcgctgtcgaagaagctgctcgccgaggtcaagtacggcggc
cgcagctggcgccaggagtacaccgaccagatccccggcccgctcgaggacctcggcccg
gcgagcgagaccggcaccacgatcaccttctgggccgacggcgacatcttcgagaccacg
acgtacaacttcgagaccatctcgcgccggctccaggagatggcgttcctcaacaaggga
ctgacgctgtccctgcgcgacgagcgcgtcgccgacgaggaggcggaggcggacgccgag
ggcaaggtcgcgcgggtcaaggagaagacctactgctacccgggtggcctcgaggacttc
gtcaagcacatcaacggcagcaaggacccgatccactccagcgtgatctccttcgaagcg
aagggcaccggcctcgaggtcgaggtcgcgatgcagtggaacaacggcttcacgccgtcg
gtctacacgttcgccaacacgatcaacacccacgagggcggcacccacgaagagggcttc
cgcgccgcgctgacccgcgtcgtcaacacctacgcgcgcgacaagaagctgctcaaggag
aaggacaccaacctgaccggtgacgacgtgcgcgagggcctcgccgcgatcgtctcgatc
aagctgtccgagccgcagttcgagggccagaccaagaccaagctgggcaacagcgaggcc
aagacgttcgtgcagcagacgtcgaacgagtggctggccgactggttcgagcgcaacccc
accgaggcgaagacgatcatcaacaagtcgatctcctcggcgcaggcccggatggccgcg
cgcaaggcgcgtgacctggtccgccgcaagggcgcgctcgacatcggcggcctgcccggc
aagctgaaggactgccgctccaccaagccggaggagtgcgagctctacatcgtcgagggt
gactcggccggcggctccgccaaggagggccgcgactcgatgtaccaggcgatcctgccg
atccgcggcaagatcatcaacgtcgagaaggcccgcatcgaccgcgtcctcaagaacacc
gaggtccagtcgctgatcaccgcgctcggcaccggcatccacgacgaattcgacctcgag
aagctgcgctaccacaagatcgtgctgatggccgacgccgacgtcgacggccagcacatc
accacgctgctgctcaccctgctgttccggttcatgacgccgctgatcgagcacggccac
gtcttcctctcgcggccgccgctgtacaagatcaagtggccgcgggccgagccggagtac
gcgtactccgaccgcgagcgcgacgccgtcatccaggcgggcgtcgaggccggcaagcgg
ctgccgaaggacgacgcgatccagcgctacaagggtctcggcgagatgaacgccgaagag
ctgtgggagaccacgatggacccggccaaccggctgctgggccaggtcaccctcgacgac
gccgcccaggccgacgagctgttctcggtcctgatgggcgaggacgtcgaggcccgccgc
tcgttcatcacgcgcaacgccaaggacgtgcgcttcttggacgtgtag
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