Amycolatopsis mediterranei U32: AMED_0172
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Entry
AMED_0172 CDS
T01269
Symbol
dnaQ
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd03030
DNA replication
amd03430
Mismatch repair
amd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMED_0172 (dnaQ)
03430 Mismatch repair
AMED_0172 (dnaQ)
03440 Homologous recombination
AMED_0172 (dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amd03032
]
AMED_0172 (dnaQ)
03400 DNA repair and recombination proteins [BR:
amd03400
]
AMED_0172 (dnaQ)
Enzymes [BR:
amd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AMED_0172 (dnaQ)
DNA replication proteins [BR:
amd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AMED_0172 (dnaQ)
DNA repair and recombination proteins [BR:
amd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AMED_0172 (dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
TerB
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ADJ41996
UniProt:
A0A0H3CXD7
LinkDB
All DBs
Position
184755..186140
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AA seq
461 aa
AA seq
DB search
MIESLPLLGAGGCSAAGLEFTVVDIRTTGLRSGRVVELAAVRVSADGSFGGELTTLVDPG
PGVPPGPALVHGITRGELDGAPSFGEVLGPFLDLCAGSVLVAHDLASAGAFLDREIGALG
VRMPVLPGVSTQAAARSVVRLPNYRPATVAHALGVPTRPGQSALSGARTVAQLVVGLFGR
YGLTFASPPVLPGLPRFADGRLLPRGEALPAEPGWMAEAVERIPGGGAGDAYLDLLAGVV
ADQHLAHDEVAALAVLASEAGLSEGHVRATHERLVTALREIAERDGVVTAAESRELRQVA
TALGVADAGELQPTAAGKPTRVLVLGTTVAADRLRARVLAEGVQLAKKLTASVTHLVADA
SVPADEPRLMRAAELGAVLLDVGVAPVALGFEPPPAPPAATAARMPKLVGGRVLMGIGLL
LMFIVVVAMFAGTPLAAGIFLAVFGVGALLGGWWLAEPAPR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgaatccctcccgctgctcggcgccggcggctgttccgccgccggcctcgagttc
accgtcgtggacatccggaccaccgggctgcgctccggacgcgtcgtcgaactcgccgcg
gtgcgggtcagcgccgacggctcgttcggcggggagctgacgacgctggtcgatcccgga
cccggggtgccgcccggtccggcgctcgtccacggcatcacgcgcggcgaactcgacggt
gcgccgtcgttcggcgaggtgctggggccgttcctcgacctgtgcgccggcagcgtgctc
gtggcgcacgacctcgcgtccgccggcgccttcctcgaccgcgagatcggggcactcggg
gtccggatgccggtgctgccgggcgtttcgacgcaggcggccgcccgttcggtggtgcgg
ctgccgaactaccggccggccaccgtggcgcacgccctcggggtgcccacccggcccggg
cagtcggcgttgtccggtgcgcggacggtcgcccagctggtggtgggcttgttcgggcgg
tacggcctgacgttcgcctcgccaccggtcctgcccggcctgccccggttcgccgacggc
cggctgctgccccgcggcgaggcgttgcccgccgagccggggtggatggccgaggccgtc
gagcggatccccggcggcggggccggggacgcctacctcgacctgctcgccggagtcgtc
gccgaccagcacctcgcgcacgacgaggtggcggccctggccgtgttggcgagcgaggcc
ggcctgtccgaagggcacgtgcgggcgacgcacgaacggctcgtgaccgcgctgcgggag
atcgcggaacgggacggcgtggtgaccgcggcggagtcgcgcgagctgcggcaggtggcc
accgcactcggcgtcgccgacgccggcgagttgcagcccaccgcggccgggaaaccgacg
cgggtgctggtgctcggcaccacggtggcggcggaccggctgcgggcccgggtcctcgcc
gagggcgtccagctggccaagaagctgaccgcgagcgtcacccacctcgtggccgacgcg
tccgtgcccgcggacgagccccggctgatgcgggccgccgagctgggcgcggtcctgctc
gacgtcggcgtcgccccggtggccctcggcttcgagccgccgcccgcgccaccggccgcg
acggcggcccggatgccgaagctcgtcggcgggcgggtcctgatggggatcgggctgctg
ctgatgttcatcgtcgtggtcgcgatgttcgcgggaactccgctggccgccgggatcttc
ctcgccgtcttcggcgtgggtgccctgctcggcgggtggtggctggccgagcccgcgccg
cgctag
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