Amycolatopsis mediterranei U32: AMED_1007
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Entry
AMED_1007 CDS
T01269
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd00521
Streptomycin biosynthesis
amd00523
Polyketide sugar unit biosynthesis
amd00525
Acarbose and validamycin biosynthesis
amd00541
Biosynthesis of various nucleotide sugars
amd01055
Biosynthesis of vancomycin group antibiotics
amd01100
Metabolic pathways
amd01110
Biosynthesis of secondary metabolites
amd01250
Biosynthesis of nucleotide sugars
Module
amd_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
AMED_1007 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
AMED_1007 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
AMED_1007 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
AMED_1007 (rfbB)
00525 Acarbose and validamycin biosynthesis
AMED_1007 (rfbB)
Enzymes [BR:
amd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
AMED_1007 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
RmlD_sub_bind
NAD_binding_10
NmrA
Motif
Other DBs
NCBI-ProteinID:
ADJ42825
UniProt:
A0A0H3CXP4
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All DBs
Position
1064630..1065619
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AA seq
329 aa
AA seq
DB search
MRVLVTGGAGFIGSHYVRQVLTGAYPTLRDAEVVVLDKLTYAGNEANLAPVAADPRLKFV
RGDICDTALVTEVMTGVDLVVHFAAESHVDRSILGAADFVLTNVLGTQNLLQAALEAGVG
KFVHVSTDEVYGSIEHGSWTEDHLLEPNSPYSASKASSDLVARSFFRTHGLPVCITRCSN
NYGPYQFPEKVIPLFVTSLLDGGKVPLYGDGLNVRDWLHVDDHCHGIQLVADGGRPGEIY
NIGGGTELTNRSLTEKLLEAVGASWDSVEPVEDRKGHDRRYSVDITKISRELGYAPRVSF
EDGLAATVAWYRDNRAWWEPLAGRAALKK
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtcctggtcaccggtggtgccggcttcatcgggtcgcactacgtccggcaggtg
ctgaccggcgcctacccgacgctgcgcgacgccgaggtggtcgtgctggacaaactcacc
tacgcgggtaacgaagccaacctggccccggtcgccgccgacccgcggctgaagttcgtc
cgcggcgacatctgcgacacggcgctggtcaccgaggtgatgaccggtgtggacctcgtc
gtgcacttcgcggcggagtcccatgtggaccgctcgatcctcggcgcggccgacttcgtg
ctgacgaacgtgctcggcacgcagaacctgctgcaggcggccctggaagccggcgtcggc
aagttcgtgcacgtgtccaccgacgaggtgtacggctcgatcgagcacggttcgtggacc
gaagaccacctgctggagccgaattcgccctattcggcgtcgaaggcgtcctccgatctg
gtggcgcggtcgttcttccgcacccacgggctgccggtgtgcatcacccggtgttccaac
aactacggtccgtaccagttcccggagaaggtcatcccgctgttcgtcaccagcctgctc
gacggggggaaggtgccgctctacggtgacgggctcaacgtccgtgactggctgcacgtg
gacgaccactgccacggcatccagctggtcgccgacggcggccggccgggcgagatctac
aacatcggcggcggcaccgagctgaccaaccggtcgctgacggagaagctgctggaggcg
gtcggcgcgagctgggacagcgtcgagccggtcgaagaccgcaagggccacgaccgccga
tactcggtggacatcacgaagatcagccgggagctggggtacgctccgcgcgtctccttc
gaggacggtctggccgcgacagtggcgtggtaccgggacaatcgcgcgtggtgggagccg
ctggccggacgggccgcgctgaagaaatag
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