Amycolatopsis mediterranei U32: AMED_1516
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Entry
AMED_1516 CDS
T01269
Symbol
araF
Name
(GenBank) periplasmic substrate-binding component of ABC-type L-arabinose transport system
KO
K10537
L-arabinose transport system substrate-binding protein
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
AMED_1516 (araF)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
amd02000
]
AMED_1516 (araF)
Transporters [BR:
amd02000
]
ABC transporters, prokaryotic type
Saccharide, polyol, and lipid transporters
L-Arabinose transporter
AMED_1516 (araF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_4
Peripla_BP_1
Peripla_BP_3
BRCT_3
Motif
Other DBs
NCBI-ProteinID:
ADJ43329
UniProt:
A0A0H3CZH3
LinkDB
All DBs
Position
complement(1618802..1619776)
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AA seq
324 aa
AA seq
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MISGALLASCSSGKDTAAPQQQAPTNGKVTLYYLQKQGDQQYFVEQAQGAQEKAKELGVE
LKVVNLGQDANKAITELDAAVAQGANGVAIVVPDQAIGPQVIDKAKSAGIPLIASDDVIK
DGTGAKAPFVGFNGSQMGDSVGTEAGKLFKAAGWAAADTKIISAYKQDLTVCTDRVNAAK
SAFAKSAGADVQVIDVGTDNSPVDAQNRSGAVIGSNPGVKHWVVWGCNDENETGVVTALA
NSGVQASNIIGVGLGAYLTCKDWAAGKDTGNKSALYISGAEVGRSAIQVLVDKVKNGKAL
PAETIAKTTIVNKDNYKQAGVNCT
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
ttgatttccggcgctctgctggcttcctgctcttcgggcaaagacaccgcggcgccgcag
cagcaggcgcccaccaacggcaaggtcaccctgtactacctgcagaaacagggcgaccag
cagtacttcgtcgagcaggcgcagggcgcgcaggagaaggcgaaggagctcggcgtcgag
ctcaaggtcgtcaacctcggccaggacgccaacaaggcgatcaccgaactggacgccgcg
gtcgcgcagggcgccaacggcgtcgcgatcgtcgtcccggaccaggcgatcggcccgcag
gtgatcgacaaggccaagagcgcaggcatcccgctcatcgcctccgacgacgtcatcaag
gacggcaccggcgcgaaggccccgttcgtcggcttcaacggcagccagatgggcgactcg
gtcggcaccgaggccgggaagctgttcaaggccgcgggctgggccgccgccgacaccaag
atcatcagcgcgtacaagcaggacctgaccgtctgcaccgaccgcgtcaacgccgcgaag
tcggcgttcgccaaatccgcgggcgccgacgtccaggtcatcgacgtcggcaccgacaac
tcccccgtcgacgcgcagaaccgctccggcgcggtgatcggctccaacccgggcgtcaag
cactgggtcgtgtggggctgcaacgacgagaacgagaccggcgtggtgaccgcgctggcc
aactccggcgtccaggcgagcaacatcatcggcgtcgggctgggcgcctacctcacctgc
aaggactgggccgcgggcaaggacaccggcaacaagtccgcgctctacatctccggcgcc
gaggtcggccgctcggccatccaggtgctggtcgacaaggtgaagaacggcaaggcactg
cccgccgagacgatcgccaagaccacgatcgtcaacaaggacaactacaagcaggccggc
gtcaactgcacctga
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