Amycolatopsis mediterranei U32: AMED_1701
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Entry
AMED_1701 CDS
T01269
Symbol
hupB
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
amd
Amycolatopsis mediterranei U32
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amd03032
]
AMED_1701 (hupB)
03036 Chromosome and associated proteins [BR:
amd03036
]
AMED_1701 (hupB)
03400 DNA repair and recombination proteins [BR:
amd03400
]
AMED_1701 (hupB)
DNA replication proteins [BR:
amd03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
AMED_1701 (hupB)
Chromosome and associated proteins [BR:
amd03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
AMED_1701 (hupB)
DNA repair and recombination proteins [BR:
amd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
AMED_1701 (hupB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
Phage_L5_Gp45
DUF1869
Motif
Other DBs
NCBI-ProteinID:
ADJ43512
LinkDB
All DBs
Position
1820930..1821607
Genome browser
AA seq
225 aa
AA seq
DB search
MTNKAQLIEALSERLGDDKKVAAQAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAART
ARNPRTGEAVKVKKTNVPAFRAGTTFKDVISGTKKLPKATPVKRTATGTRATATKTAAAA
APAKATTTRTTTRAAAAKPAATTTRTRATAAKPAAKATAATKPAATKPAAATAAPKTTAA
KATTAKATTSRAKTAAAKPAATKTAAAKKPAAAKAPAKRTSAAKK
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacaaggcccagctgatcgaggcgctgtcggagcgtctgggcgatgacaagaag
gtggctgcgcaggccgtggacggcttggtggacatcatcatccggacggtcaacaagggc
gagaaggtcaacatcaccggcttcggggtgttcgagaagcgcgctcgcgccgctcgtacg
gcgcggaacccgcgcaccggtgaggccgtgaaggtgaagaagaccaacgtgcccgcgttc
cgtgccggcaccacgttcaaggacgtcatctccggcaccaagaagctcccgaaggcgacc
ccggtcaagcggaccgccaccggcacgcgggcgacggccaccaagaccgctgcggccgcc
gcgccggccaaggccacgacgacccgcaccaccacccgcgcggcggcggccaagccggcc
gcgacgaccacgcggacccgcgccaccgcggcgaagccggccgccaaggcgaccgccgcc
accaagcccgccgccaccaagcccgccgcggccacggcggcgccgaagaccacggcggcc
aaggccaccacggcgaaggcgaccacctcgcgggcgaagacggccgccgccaagccggcc
gcgacgaagaccgccgcggccaagaagccggccgccgccaaggccccggccaagcgcacc
tcggccgccaagaagtaa
DBGET
integrated database retrieval system
