Amycolatopsis mediterranei U32: AMED_1715
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Entry
AMED_1715 CDS
T01269
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
amd
Amycolatopsis mediterranei U32
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amd03400
]
AMED_1715
DNA repair and recombination proteins [BR:
amd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AMED_1715
Archaeal homologous recombinant proteins
AMED_1715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_29
ABC_tran
AAA_21
AAA_27
MMR_HSR1
AAA_15
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
ADJ43526
UniProt:
A0A0H3D1Z0
LinkDB
All DBs
Position
1839869..1842754
Genome browser
AA seq
961 aa
AA seq
DB search
MLLEMTGFASFREKTEVSFEDTDYFALVGPTGAGKSTVIDALTFALYGSVARWDHEGLVA
PALAPTVNRATVRLVFDAGGARYHVVREVRRSGGKKPTVSVKNVRLERLIDPAALGGPED
DADAVAADSEVTPAVERLLGLTFKHFCTCVALPQGDFAEFLHAKAADRQKILIKLLGLEV
YERIGRRAGVTAEQQKQRAAVLTEQLGSYADATEEAVAELAARMTALTELDARVTAALPG
LNDATRAHDEARQRVVALTTELKVLDAVERPDGVEDLETRRRDAADAATAARGALESAET
ADEAARAALAAAPARSELERIRADRTELEATETALPRLEEAAKTALQSKDAAAVAVTEAL
AVVEAARKNRDSTARAAEDTAAEAARARQDRDRLTGLRPPADLGDLSADSARVAKRTAAA
AARLSSAEAADAEARAALAAQPDVAPLAAARSDARTLYAVCEAQRKAAPEQAARRRELET
ARSAFARADAEVTAAKTAVTEAERAGQALSLRAGLAVGHACPVCEQEVTALPDAGGHAHL
AEARERLERAEGERATAEAVVRKLERAADRDADSAASAAAQAEELRAVLAEVAGPPESAV
LLRPVEAAFSEQDYADLVAAVRERGEWLSKTIDGRARVAETASAADQELAAARAERAAAQ
HEADAVEKSFAAAREALRAARDPLVELGAPAIDGDDVPSGWQRLTAWAASALADRRTTLA
ALEAAAEAAGKEAVVAADDLAAAERNAEEWRKRAVDAGLAEQAAATELATARRRRGELAA
ALAGAPSAAVVTEELAKVASLEEAAKRADADLRTARVAAKRATEAQAGIGAQVDAERQRL
SRARDPLVGLGAPPIDGFSGVRVAEPPAQGEAPVVTDGESLLEAWTALTDWAAGQAKAHR
ELLAVAKTAEGEAAEALQAAERAVAGDVTALGVAVPDGPVRDRVPVAVAAARRAPKPTTP
T
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
gtgctgctggagatgaccggcttcgcgtccttccgcgagaagaccgaagtcagcttcgaa
gacaccgattacttcgcgctcgtcgggccgaccggcgcgggcaagagcacggtcatcgac
gcgctcaccttcgcgttgtacggctctgtggcccgctgggaccacgaaggtctcgtcgcg
cccgcgctggcgccgacggtgaaccgcgccaccgtgcggctggtcttcgacgccggcggc
gcgcgctaccacgtggtgcgggaagtccggcgcagcggcggcaagaaacccacggtcagc
gtcaagaacgtccgcctggaacggctcatcgacccggccgcgctcggcggcccggaggac
gacgccgacgccgtggccgcggactccgaggtcaccccggcggtcgaacgcctgctcggg
ttgacgttcaagcacttctgcacctgcgtggcgctgccccagggcgacttcgcggagttc
ctgcacgcgaaggccgccgaccggcagaagatcctcatcaagctgctgggcctggaggtc
tacgagcgcatcggccgccgggccggggtgacggcggagcagcagaagcagcgcgccgcc
gtcctcaccgaacagctcggcagctacgccgacgccaccgaagaagccgtcgccgagctg
gcggcgaggatgacggcgctcacggagctggacgcgcgggtgaccgcggccctgccgggg
ttgaacgacgccacgcgcgcgcacgacgaagcccggcaacgcgtcgtcgcgctcacgacg
gagctgaaagtcctcgacgctgtagaacgcccggacggcgtcgaagacctcgaaacccgg
cgtcgcgacgcggcggacgcggccacggccgcccggggagcgttggagtcggcggaaacg
gcggacgaagccgcccgcgccgcgctcgccgcggcgcccgcgcgcagtgaactggaacgg
atccgcgccgaccgcaccgagctcgaggcgacggagacggcccttccgcggctcgaagaa
gcggcgaaaacggcgttgcagagcaaggacgcggccgccgtcgcggtcaccgaagccctc
gccgtcgtcgaggcggcccggaagaaccgggactcgacggcccgtgccgcggaggacacc
gccgcggaagccgcgcgggcccgccaggatcgcgaccggctgaccggcctgcgcccgccc
gcggatctcggggacctgtcggcggattcggcgcgggtggcgaagcgcacggcggccgcg
gccgcccgcctgagctcggccgaggccgccgacgccgaagcgcgggcggcgctggccgcg
cagccggacgtcgctccgctcgcggcggcgcgctccgatgcgcgcacgctgtatgcggtg
tgcgaggcgcaacggaaagccgcccccgagcaggccgcgcgccggagggaactcgaaacg
gcgcgaagcgccttcgcccgcgcagacgccgaagtgacggcggcgaagaccgcggtgacc
gaagcggaacgggccgggcaggcgctgagcctgcgggccggcctcgccgtcgggcacgcg
tgcccggtgtgcgagcaggaagtcacggcgctgcccgatgccggcggccacgcccacctg
gccgaggcccgcgaacgcctcgagcgcgccgaaggcgagcgcgccaccgccgaagccgtc
gtgcgcaagctggagcgggccgccgaccgcgacgccgattccgccgcgtcggcggccgcg
caggcggaggaactgcgcgcggtgctggccgaggtggccggcccgccggaatcggccgtg
ctgctgcggccggtcgaggctgctttctccgagcaggactacgcggacctcgttgccgcc
gtgcgcgagcggggcgagtggctgtcgaagacgatcgacggccgcgctcgcgtcgccgag
accgcgagcgccgcggaccaggaactggccgcggctcgcgccgaacgcgcggcggcgcag
cacgaagccgacgccgtcgagaagtcgttcgcggcggccagggaagcgctgcgggccgcg
cgcgaccccctggtggagctgggcgcaccggccatcgacggcgacgacgtcccgtcaggc
tggcagcggctcaccgcgtgggcggcttccgcgctggcggaccggcggacgacgctggcc
gcgctcgaagcggccgccgaagccgcgggcaaagaagccgtcgtcgcggcggacgacctc
gccgccgcggagcggaacgccgaggagtggcggaagcgggccgtcgacgcgggcttggcc
gagcaggcggcggccaccgagctcgccaccgcccggcgccggcgcggtgaactcgccgcg
gcgctcgccggtgcgccgtccgccgccgtcgtcaccgaggagctggcgaaggtcgcttcc
ctggaagaagccgcgaagcgagcggacgcggatctgcgcactgcccgggtggccgcgaaa
cgcgccacggaagcccaggcgggcatcggcgcccaggtcgacgccgagcggcagcggctg
tcccgggcccgagacccgctggtcggcctgggtgccccgccgatcgacggcttttcgggg
gtccgggtggcggagcccccggcccagggcgaagccccggttgtcacagacggcgaaagc
ctcctcgaagcctggaccgcgctcacggattgggccgccggccaggcgaaagcccaccgc
gagctgctggccgtcgcgaagaccgccgaaggtgaagccgccgaagcgttgcaagcggcc
gaacgcgcggtcgccggcgacgtcaccgcgctcggggtcgccgtgccggacgggccggtg
cgcgaccgcgtcccggtcgccgtcgcggccgcgcggcgcgcgccgaagccgaccacaccg
acatga
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