Amycolatopsis mediterranei U32: AMED_1725
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Entry
AMED_1725 CDS
T01269
Symbol
hupB
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
amd
Amycolatopsis mediterranei U32
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amd03032
]
AMED_1725 (hupB)
03036 Chromosome and associated proteins [BR:
amd03036
]
AMED_1725 (hupB)
03400 DNA repair and recombination proteins [BR:
amd03400
]
AMED_1725 (hupB)
DNA replication proteins [BR:
amd03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
AMED_1725 (hupB)
Chromosome and associated proteins [BR:
amd03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
AMED_1725 (hupB)
DNA repair and recombination proteins [BR:
amd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
AMED_1725 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
Motif
Other DBs
NCBI-ProteinID:
ADJ43536
UniProt:
A0A0H3D201
LinkDB
All DBs
Position
1851412..1852197
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AA seq
261 aa
AA seq
DB search
MANKAQLIEALTERLGDKKAASEAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTA
RNPRTGEAVRVKKTNVPAFRAGTTFKDVISGAKKLPKATPVKRTPTATRAAATTTTRATT
PRATTSRTAAAAPKPATTRSTTTRTRATAAKPATTRTPAAKPATTRAKAAPKTTAAKTTA
AKAAPPAKAATAAKTTVAKATTAAKSAAAKAATAAKTTAAKAATAAKPTTARKTSAARTP
AAKTTAAKTPARRTSAAAKKD
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaggcccagctgatcgaggcgctgaccgagcgcctgggcgacaagaaggcc
gcttccgaggcggtcgacggtctggtcgacatcatcatccggacggtcaacaagggcgaa
aaggtcaacatcaccggcttcggggtgttcgagaagcgcgcccgtgccgcgcggacggct
cgcaacccgcgcaccggtgaggccgtccgcgtcaagaagaccaacgtgcccgccttccgc
gcggggaccacgttcaaggacgtcatttcgggagcgaagaagctgccgaaggcgaccccg
gtcaagcgcacaccgacggccacccgagcggcggcgaccacgacgacgcgcgcaaccacg
ccccgcgcaaccacgtcccgcaccgcggcggcggctccgaagccggccaccacgcggtcg
acgaccacgcgaacccgcgcaacggcggcaaagccggccacgacgaggacaccggcggcc
aagccggcaaccacccgcgccaaggcggcgccgaagacgacggcggcgaagaccacggcg
gcgaaggcggccccgcccgcaaaggcggccacggcggcgaagaccacggtggcgaaggcg
accacggctgcgaagagcgcggccgcgaaggccgctacggcggcgaagaccaccgccgcg
aaggcagccacggccgcgaagccgactacggctcgtaagacctcggcggcccggaccccg
gcggccaagaccaccgcggccaagaccccggcaaggcggacctcggccgcggcgaagaag
gactga
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