Amycolatopsis mediterranei U32: AMED_1860
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Entry
AMED_1860 CDS
T01269
Symbol
pcaH
Name
(GenBank) protocatechuate 3,4-dioxygenase, beta subunit
KO
K00449
protocatechuate 3,4-dioxygenase, beta subunit [EC:
1.13.11.3
]
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd00362
Benzoate degradation
amd00624
Polycyclic aromatic hydrocarbon degradation
amd01100
Metabolic pathways
amd01120
Microbial metabolism in diverse environments
amd01220
Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
AMED_1860 (pcaH)
00624 Polycyclic aromatic hydrocarbon degradation
AMED_1860 (pcaH)
Enzymes [BR:
amd01000
]
1. Oxidoreductases
1.13 Acting on single donors with incorporation of molecular oxygen (oxygenases)
1.13.11 With incorporation of two atoms of oxygen
1.13.11.3 protocatechuate 3,4-dioxygenase
AMED_1860 (pcaH)
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Motif
Pfam:
Dioxygenase_C
PCDO_beta_N
CarboxypepD_reg
NOMO1-like_2nd
SdrD_B
Motif
Other DBs
NCBI-ProteinID:
ADJ43670
LinkDB
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Position
1993311..1994048
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AA seq
245 aa
AA seq
DB search
MATPTEFRLPRYGEDPEGTHPPLDFSGYGSTALRHPKQDLVLLPQMLTEVTGPLLGPGRL
GEHDNDLTRQHAGEPQGQRIIVTGRLLDGEGRPVRDSLVEIWQANAGGRYRHTGDRWPSP
LDPNFDGVGRTLTDSDGRYTFTTIKPGAYPWKNHDNAWRPAHIHFSVFGSAFTQRLVTQM
YFPDDPLFSQDPIFNSIPDEKARQRMVSRYDHDITQAEWALGFQFDIVLRGRDASVFEEE
EEDED
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
gtggctactccgaccgaattcaggctgccgcgctacggggaagaccccgaaggcacccac
ccgcccctcgacttcagcggctacggctccacggcgctgcggcacccgaagcaggacctc
gtcctgctgccacagatgctgaccgaggtcaccggcccgctgctcgggcccggccgcctc
ggtgagcacgacaacgacctcacccggcagcacgcgggcgaaccgcagggccagcgcatc
atcgtcaccgggcgcctcctcgacggcgaaggccgtccggtgcgtgactccctggtggag
atctggcaggcgaacgcgggcggccgctaccggcacaccggcgaccgctggccgtccccg
ctcgatccgaacttcgacggcgtcggccgcaccctgaccgacagcgacggccgctacacc
ttcaccaccatcaagcccggcgcctacccgtggaagaaccacgacaacgcctggcgcccg
gcgcacatccacttctcggtgttcggctcggcgttcacccagcggctggtcacccagatg
tacttcccggacgacccgctgttctcccaggacccgatcttcaactcgatcccggacgag
aaggcccggcagcggatggtctcgcgctacgaccacgacatcacgcaggccgagtgggcg
ctcgggttccagttcgacatcgtgttgcgcgggcgcgacgcgtcggtgttcgaagaggaa
gaggaggacgaagactga
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