Amycolatopsis mediterranei U32: AMED_1971
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Entry
AMED_1971 CDS
T01269
Name
(GenBank) RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd02020
Two-component system
amd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AMED_1971
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AMED_1971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amd03021
]
AMED_1971
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
amd02035
]
AMED_1971
Transcription machinery [BR:
amd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AMED_1971
Bacterial motility proteins [BR:
amd02035
]
Flagellar system
Flagellar assembly proteins
Stator
AMED_1971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
UPF0122
CENP-B_N
Sigma70_ECF
HTH_23
Sds3
KORA
Motif
Other DBs
NCBI-ProteinID:
ADJ43779
UniProt:
A0A0H3D0T4
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All DBs
Position
2109498..2110346
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AA seq
282 aa
AA seq
DB search
MTAGPHVTEAAGVTTHGEVAAPAETRVGYDVDAGIAALWQQFADSPDQASRDRLVLHYAP
LVKYVAGRVGTGLPTHIDVGDLVQSGIFGLVDAIEKFDPERGLRFETYAMQRIRGAILDD
LRSQDWVPRAVRSKAKEAERAMERLGARLHRTPTDAELAAELGIGLDDLRDFYGQLQLTS
VVALEDLVAAGKDSGSLVDTLPDDDAVDPVAVLVDQDNRRQLAQAIAQLTERDKIVVSLY
YFESLTLAEIGKVLGVTESRVSQLHTRAVMRLRAKLVEQTGT
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaggcccgcacgtgaccgaagccgccggagtgaccactcacggtgaggttgcc
gcgcccgcggaaacccgggtcggctacgacgtggacgccgggatcgcggccctgtggcag
cagttcgccgacagcccggaccaggcgtcgcgcgatcggctcgtgctgcactacgccccg
ctcgtcaagtacgtcgccggccgggtcggcaccgggctgcccacccacatcgacgtcggt
gacctcgtgcagtcgggcatcttcgggctcgtcgacgcgatcgagaagttcgaccccgag
cgcggcctgcgcttcgagacgtacgcgatgcagcgcatccgcggcgcgatcctcgacgac
ctccgttcgcaggactgggtgccgcgcgcggtgcgcagcaaggccaaggaggccgagcgc
gcgatggagcgcctcggcgcccgcctgcaccgcaccccgaccgacgcggagctcgccgcc
gaactcggcatcggcctcgacgacctgcgcgacttctacggccagctgcagctgaccagc
gtcgtcgcgctggaggacctggtggccgcgggcaaggacagcggctccctggtcgacacg
ctgcccgacgacgacgccgtcgacccggtcgcggtgctcgtcgaccaggacaaccgccgc
cagctcgcccaggcgatcgcgcagctgaccgagcgggacaagatcgtggtcagcctctac
tacttcgaaagcctgaccctcgccgagatcggcaaggttctcggggtcacggagtcgcgg
gtgagccagctgcacacgcgggccgtcatgcggctgcgcgccaagctggtcgagcagacc
ggcacctga
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