KEGG   Amycolatopsis mediterranei U32: AMED_1971
Entry
AMED_1971         CDS       T01269                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K02405  RNA polymerase sigma factor FliA
Organism
amd  Amycolatopsis mediterranei U32
Pathway
amd02020  Two-component system
amd02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:amd00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AMED_1971
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    AMED_1971
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amd03021]
    AMED_1971
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:amd02035]
    AMED_1971
Transcription machinery [BR:amd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AMED_1971
Bacterial motility proteins [BR:amd02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    AMED_1971
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r4_2 Sigma70_r3 UPF0122 CENP-B_N Sigma70_ECF HTH_23 Sds3 KORA
Other DBs
NCBI-ProteinID: ADJ43779
UniProt: A0A0H3D0T4
LinkDB
Position
2109498..2110346
AA seq 282 aa
MTAGPHVTEAAGVTTHGEVAAPAETRVGYDVDAGIAALWQQFADSPDQASRDRLVLHYAP
LVKYVAGRVGTGLPTHIDVGDLVQSGIFGLVDAIEKFDPERGLRFETYAMQRIRGAILDD
LRSQDWVPRAVRSKAKEAERAMERLGARLHRTPTDAELAAELGIGLDDLRDFYGQLQLTS
VVALEDLVAAGKDSGSLVDTLPDDDAVDPVAVLVDQDNRRQLAQAIAQLTERDKIVVSLY
YFESLTLAEIGKVLGVTESRVSQLHTRAVMRLRAKLVEQTGT
NT seq 849 nt   +upstreamnt  +downstreamnt
atgaccgcaggcccgcacgtgaccgaagccgccggagtgaccactcacggtgaggttgcc
gcgcccgcggaaacccgggtcggctacgacgtggacgccgggatcgcggccctgtggcag
cagttcgccgacagcccggaccaggcgtcgcgcgatcggctcgtgctgcactacgccccg
ctcgtcaagtacgtcgccggccgggtcggcaccgggctgcccacccacatcgacgtcggt
gacctcgtgcagtcgggcatcttcgggctcgtcgacgcgatcgagaagttcgaccccgag
cgcggcctgcgcttcgagacgtacgcgatgcagcgcatccgcggcgcgatcctcgacgac
ctccgttcgcaggactgggtgccgcgcgcggtgcgcagcaaggccaaggaggccgagcgc
gcgatggagcgcctcggcgcccgcctgcaccgcaccccgaccgacgcggagctcgccgcc
gaactcggcatcggcctcgacgacctgcgcgacttctacggccagctgcagctgaccagc
gtcgtcgcgctggaggacctggtggccgcgggcaaggacagcggctccctggtcgacacg
ctgcccgacgacgacgccgtcgacccggtcgcggtgctcgtcgaccaggacaaccgccgc
cagctcgcccaggcgatcgcgcagctgaccgagcgggacaagatcgtggtcagcctctac
tacttcgaaagcctgaccctcgccgagatcggcaaggttctcggggtcacggagtcgcgg
gtgagccagctgcacacgcgggccgtcatgcggctgcgcgccaagctggtcgagcagacc
ggcacctga

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