Amycolatopsis mediterranei U32: AMED_2462
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Entry
AMED_2462 CDS
T01269
Symbol
rpoE
Name
(GenBank) RNA polymerase sigma-70 factor, ECF subfamily
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
amd
Amycolatopsis mediterranei U32
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amd03021
]
AMED_2462 (rpoE)
Transcription machinery [BR:
amd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AMED_2462 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
Sigma70_ECF
HTH_24
HTH_23
Sigma70_r3
GerE
Xre-like-HTH
HTH_30
DprA_WH
HTH_AsnC-type
PhyR_sigma-like
HTH_28
Rv2175c_wHTH
Myb_DNA-bind_8
Motif
Other DBs
NCBI-ProteinID:
ADJ44258
UniProt:
A0A0H3D427
LinkDB
All DBs
Position
complement(2624120..2624704)
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AA seq
194 aa
AA seq
DB search
MSSPGEAGDDADVITASLRHPERFAVVFDRHAPHIHRYLARRLGAQVADDVLGETFLIAF
GGRARYDPAFPSARPWLYGIATNLAGQRRRVEAREYRLRAALGPPAHQVCHADRVAERVT
AQAMTGRLAGALAGLARRDRDVLLLIAWEGLAYEEVAAALGIPVGTVRSRLNRARRKVRA
ELGHAPAEEVSNHG
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaccaggtgaagccggcgacgacgcggacgtcatcaccgcgtcgctccggcac
cccgagcggttcgcggtggtcttcgaccgccacgccccgcacatccatcgctacctcgcc
cggcggctgggtgcccaggtcgccgacgacgtgctgggcgagacgttcctgatcgcgttc
ggcgggcgcgcccgctacgacccggcgttcccgagcgcgcggccgtggctctacggcatc
gccacgaacctcgccggccagcgccgtcgcgtcgaagcacgcgagtaccggctgcgcgcc
gccctcggcccgcccgcccaccaggtgtgtcacgcggaccgggtcgccgagcgggtgacg
gcgcaggcgatgaccggacggctggccggcgccctggccgggctggcccggcgggaccgc
gacgtcctgctgctgatcgcctgggaggggctggcctacgaggaggtcgcggccgcactg
gggatcccggtcggcaccgtccggtcgcgcttgaaccgggcccgcaggaaggtccgcgcg
gaactggggcacgcgcccgccgaggaggtctcgaaccatggatga
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