Amycolatopsis mediterranei U32: AMED_3840
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Entry
AMED_3840 CDS
T01269
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase (NADP+)
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd00250
Alanine, aspartate and glutamate metabolism
amd00310
Lysine degradation
amd00350
Tyrosine metabolism
amd00650
Butanoate metabolism
amd00760
Nicotinate and nicotinamide metabolism
amd01100
Metabolic pathways
amd01120
Microbial metabolism in diverse environments
Module
amd_M00027
GABA (gamma-Aminobutyrate) shunt
amd_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
AMED_3840 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
AMED_3840 (gabD)
00310 Lysine degradation
AMED_3840 (gabD)
00350 Tyrosine metabolism
AMED_3840 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
AMED_3840 (gabD)
Enzymes [BR:
amd01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
AMED_3840 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
AMED_3840 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
AMED_3840 (gabD)
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Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
ADJ45619
UniProt:
A0A0H3D7U0
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Position
complement(4170707..4172140)
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AA seq
477 aa
AA seq
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MSSHPEPRMLVDGRWTRGSGRETRPVENPVTGEILTELPVATIEDLDEALDAARRAFPGW
RRTSPVERSRVLREGARLIRERAGDVAMVITLELGKPLAESRAEVLLAAEHLEWAAEEAR
RGYGRVIPARDPDTLQHTVLEPVGVVAAFAPWNAPAVTPSRKIGGALAAGCSMILKPAEE
TPTAALMMAAALQEAGLPDGVLNVVFGDPPMIGRHLVTSPIVQAVTFTGSTAVGAELHAL
GAPSMTRMTMELGGHAPVLVLADADVATVARSAVPACYRNSGQVCTSPTQFLVHTDVYDR
FLTAFVDAVRARKVGDGLADGVQMGPVATGRRLQALTEMTADARARGAVVETGGERIGDI
GWFFAPTVLTSVPPDSLAGSVEPFGPLKTVTPFDDLDAALAEANRLPFGLASYAWTHDSR
AAARIAGELEAGSVALNSWRPSLPETPFGGFHLSGVGTEGGAEGLRGFQRIKYVSRS
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgcaccccgaaccccggatgctcgtcgacggccgctggacccgcggttccggg
cgggagacccgcccggtcgagaatccggttaccggcgaaatcctcaccgaattgcccgtc
gccaccatcgaggatctcgacgaggcactggacgccgcgcgccgggcgttccccggctgg
cgccggacctcgccggtcgagcggagccgcgtgctgcgcgagggcgcccggctgatccgc
gagcgggccggtgacgtcgccatggtcatcacgctggagctgggcaagccgctggccgag
tcccgcgccgaggtgctgctggccgccgagcacctcgagtgggcggccgaggaggcccgg
cgcggctacggccgggtcatcccggcccgggacccggacaccctgcagcacaccgtgctc
gagcccgtcggtgtggtggccgcgttcgcgccgtggaacgcacccgcggtgaccccgtcg
cgcaagatcggtggcgcgctggccgccggctgctcgatgatcctcaaaccggccgaagag
accccgacggcggcgctgatgatggcggcggccctgcaggaagccgggctgcccgacggc
gtgctgaacgtggtcttcggcgatccgccgatgatcgggcggcacctggtgacctcgccg
atcgtgcaagcggtgaccttcaccggatccaccgcggtcggcgccgagctgcacgcgctg
ggcgcgccgtcgatgacccggatgaccatggagctcggcggccacgccccggtgctggtg
ctcgccgacgccgacgtggcgacggtcgcccgctcggccgtcccggcctgctaccgcaac
tccggccaggtgtgcacttccccgacgcagttcctcgtccacacggacgtctacgaccgg
ttcctgaccgcgttcgtcgacgcggtccgcgcccgcaaggtcggcgacgggctggccgac
ggtgtccaaatgggacccgtcgcgaccggacggcggctccaagccttgaccgaaatgacc
gccgacgcccgggcccgtggtgccgttgtggagaccggcggagagcggatcggcgacatc
gggtggttcttcgccccgaccgtgctgacgtcggtcccgccggactcgctcgcgggctcg
gtcgagccgttcggcccgctcaagaccgtgaccccgttcgacgacctcgacgcagcactg
gccgaggccaaccggctgcccttcgggctggcgtcctacgcgtggacccacgactcccgc
gcggcggcccgcatcgccggcgagctggaagccgggtcggtggcgctcaacagctggcgg
ccgtccctgccggaaaccccgttcggcgggttccacctcagcggcgtcggcaccgagggc
ggtgccgagggcctgcgcggcttccagcggatcaagtacgtgagccgcagctga
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