Amycolatopsis mediterranei U32: AMED_4110
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Entry
AMED_4110 CDS
T01269
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase (NADP+)
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd00250
Alanine, aspartate and glutamate metabolism
amd00310
Lysine degradation
amd00350
Tyrosine metabolism
amd00650
Butanoate metabolism
amd00760
Nicotinate and nicotinamide metabolism
amd01100
Metabolic pathways
amd01120
Microbial metabolism in diverse environments
Module
amd_M00027
GABA (gamma-Aminobutyrate) shunt
amd_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
AMED_4110 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
AMED_4110 (gabD)
00310 Lysine degradation
AMED_4110 (gabD)
00350 Tyrosine metabolism
AMED_4110 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
AMED_4110 (gabD)
Enzymes [BR:
amd01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
AMED_4110 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
AMED_4110 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
AMED_4110 (gabD)
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Motif
Pfam:
Aldedh
DUF1487
Motif
Other DBs
NCBI-ProteinID:
ADJ45887
UniProt:
A0A0H3D6C5
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Position
4511591..4513165
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AA seq
524 aa
AA seq
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MTLTPLELTRPASVTDAFLEQLVARVPGSSGATWKLTEVYTGDVLVELPQSPPEDIERAF
AVAREAQRKWAATPVKERLAVFRRAHALFVEHARTVADLIQVESGKNRRMAIEETCDPPM
VMSHYLKRAAKLLAPTKRGGPVPMLTTSTEVRLPKGVVGIIAPWNFPFATGVSDAIPALM
AGNAVVLKPDNKTALSPLYGVRLLEQAGLPEGLFQVVCGEGPDVGPTLIDHADYVMFTGS
TATGRVIGERAGRNLIGCCLELGGKNPMIVLEDADFAEAVQGAIFGAFGNTGQICMHIER
IYLPESRYEEFKTAFVAAASALDVRAAYDFGPDMGSLVSVDHMRRVKSHVDDAVAKGATV
LCGGKPRPDLGPAFFEPTILEGVTPDMLCGVTETFGPVVALHKYRTVDEAVALANDTDYG
LNASVWSTDVTAARAVAARIESGNVNVNDILATAYAAKGTPSGGVKNSGVGARHGDQGLL
KYTDVQNLAVLKKQVMGPRPGQGYEKYVESMLSGLKLMRKLRIR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcaccccgctcgaactcacccgtccggcgtcggtcaccgacgccttcctggag
cagctcgtggcccgggtgcccggctcgtccggcgcgacctggaagctcaccgaggtctac
accggcgacgtgctcgtcgagctgccgcagtcgccgcccgaggacatcgagcgggcgttc
gccgtcgcgcgcgaggcccagcggaagtgggcggccacgccggtgaaggagcggctggcg
gtgttccggcgggcgcacgcgctgttcgtcgagcacgcgcggaccgtcgccgacctcatc
caggtcgagagcggcaagaaccggcggatggcgatcgaagagacctgcgacccgccgatg
gtgatgagccactacctgaagcgggccgcgaagctgctggcgccgacgaagcgcggcggc
ccggtcccgatgctgacgacgtcgaccgaagtccggctgcccaagggggtcgtcgggatc
atcgcgccgtggaacttcccgttcgccaccggggtttccgacgcgatcccggcgttgatg
gccggcaacgcggtggtgctgaagcccgacaacaagaccgcgctgtcgccgctctacggc
gtccggctgctggagcaggcggggctgccggaagggctgttccaggtggtgtgcggcgag
ggcccggacgtcggccccacgctgatcgaccacgccgactacgtgatgttcaccggttcc
acggcgaccggccgggtgatcggcgagcgcgcgggccgcaacctcatcggctgctgcctc
gagctcggcgggaagaacccgatgatcgtgctggaagacgccgattttgccgaggccgtc
cagggtgcgatcttcggcgcgttcggcaacaccggtcagatctgcatgcacatcgagcgg
atctacctgccggaatcccggtacgaggagttcaagacggcgttcgtggcggcggcctcg
gccctcgacgtccgcgcggcgtacgacttcggccccgacatgggttcgctggtctcggtc
gaccacatgcgccgcgtcaagtcccatgtggacgatgcggtcgccaagggcgccaccgtt
ctctgcggcggcaagccccgacccgacctcggcccggcgttcttcgagccgacgatcctc
gagggcgtcacgccggacatgctctgcggcgtgaccgagacgttcggcccggtggtggcg
ctgcacaagtaccgcaccgtcgacgaagcggtggcgctggccaacgacacggactacggc
ctcaacgcctcggtctggagcaccgacgtcaccgcggcgcgcgcggtggcggcccggatc
gagtccggcaacgtgaacgtgaacgacatcctcgcgaccgcgtacgcggccaagggaacg
ccgtcgggcggggtgaagaactccggcgtcggcgcccggcacggcgatcaggggctgctg
aagtacacggacgtgcagaacctggccgtgctgaagaagcaggtgatggggccgcggccg
gggcaggggtacgagaagtacgtcgagagcatgctttccgggctgaagctgatgcggaag
ctgcggatccggtag
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