Amycolatopsis mediterranei U32: AMED_4917
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Entry
AMED_4917 CDS
T01269
Symbol
alkA
Name
(GenBank) adenosine deaminase/DNA-3-methyladenine glycosylase/8-oxoguanine DNA glycosylase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AMED_4917 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amd03000
]
AMED_4917 (alkA)
03400 DNA repair and recombination proteins [BR:
amd03400
]
AMED_4917 (alkA)
Enzymes [BR:
amd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
AMED_4917 (alkA)
Transcription factors [BR:
amd03000
]
Prokaryotic type
Helix-turn-helix
AraC family
AMED_4917 (alkA)
DNA repair and recombination proteins [BR:
amd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AMED_4917 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
DUF6233
Motif
Other DBs
NCBI-ProteinID:
ADJ46683
UniProt:
A0A0H3D9C8
LinkDB
All DBs
Position
complement(5435669..5437132)
Genome browser
AA seq
487 aa
AA seq
DB search
MHEDFERCVRAVQAKDARFDGWFYTAVLTTKIYCRPSCPVVPPKPRNMSFYPSAAAAQQA
GFRACKRCRPDASPGSPLWNERADLVARAMRLIADGVVDTEGVRGLAARLGYSVRQVERQ
VFAELGAGPLALARAQRAQTARTLIETTTLPMTELALAAGFGSIRTFNDTVREVFALSPT
ELRSRAKGTPQAAAGALVLRLPYRKPLCPDNLFGHLVATGVPGVEEWRDGAYRRTLRLPH
GHGVVALRPEDGHIACRLTLADLRDLPAATSRCRRLLDLDADPVAVDDQLATDPLLAPLV
AAAPGRRVPRTADGAEFAVRAVLGQQVSTAAARTHAARLVVAHGEPVDDPEGGLTHLFPS
PEALASLDPETLAMPRSRRRTLLGLVSALADGLDLSAGSDWEAARAALGALPGFGPWTVE
SIAMRALGDPDAFLPTDLGIKYAAEMLGLGGPAAVVARSAAWRPWRAYATQHLWATGDHA
INRMPAA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
gtgcatgaggacttcgaacggtgcgtgcgggccgtgcaggcgaaggacgcccggttcgac
gggtggttctacaccgccgtcctgacgacgaagatctactgccggcccagctgcccggtg
gtcccgcccaagccgcggaacatgagtttttacccgagcgccgcggccgcccagcaggcc
gggttccgggcctgcaagcgctgccgcccggacgcgagccccggctcgccgctgtggaac
gagcgtgccgacctggtcgcccgggcgatgcggctgatcgccgacggcgtcgtcgacacc
gaaggcgtccgcggcctcgccgcccgcctcggctacagcgtccggcaggtcgaacggcag
gtcttcgccgaactcggcgccggcccgctggctctggcccgggcccagcgcgcgcagacc
gcgcgcaccctgatcgagacgaccacgctgccgatgaccgagctggccctggccgccggg
ttcggcagcatccggacgttcaacgacaccgtccgcgaggtgttcgccctgtcgccgacc
gagctgcgcagccgcgcgaagggcacgccgcaggccgcggccggagccctcgtgctgcgg
ctgccctaccggaagccgctgtgcccggacaacctcttcgggcacctggtggcgaccggc
gtgccgggcgtggaggagtggcgggacggcgcctaccggcggacgctgcggttgccccac
ggccacggcgtcgtcgcgctgcggcccgaagacggccacatcgcctgccggctcaccctg
gccgatctgcgggacctgcccgccgccaccagccggtgccgccggctgctcgacctcgac
gccgacccggtcgccgtcgacgaccagctcgccaccgacccgctgctcgcgccgctggtc
gcggccgcgcccggccgccgggtcccgcgcacggccgacggcgccgagttcgccgtgcgg
gccgtgctgggccagcaggtctcgacggcggcggcgcggacccacgcggcgcggctcgtg
gtcgcgcacggcgaaccggtcgacgaccccgaaggcggcctgacccacctgttcccctcg
ccggaggcgctcgcttcgctggaccccgaaaccctggccatgccgcgcagccgccgtcgc
acactgctcgggctggtctcggcgttggccgacggcctggacctcagcgcgggcagcgac
tgggaagcggcccgggccgcgctgggcgcgttgcccggcttcgggccgtggacggtcgag
agcatcgcgatgcgcgctctcggcgacccggacgcgttcctcccgaccgatctcggcatc
aagtacgcggcggaaatgctgggcctcggcggcccggccgccgtcgtggcccggtccgcg
gcgtggcgcccctggcgcgcctacgccacccagcacctgtgggccaccggagaccacgcg
atcaaccggatgcccgcggcatga
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