Amycolatopsis mediterranei U32: AMED_5205
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Entry
AMED_5205 CDS
T01269
Name
(GenBank) DNA end-binding protein Ku
KO
K10979
DNA end-binding protein Ku
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AMED_5205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amd03400
]
AMED_5205
DNA repair and recombination proteins [BR:
amd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AMED_5205
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Rho_N
CPSase_L_D3
Motif
Other DBs
NCBI-ProteinID:
ADJ46968
UniProt:
A0A0H3DA62
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All DBs
Position
complement(5776644..5777576)
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AA seq
310 aa
AA seq
DB search
MARPVWSGALSLGLVTVPVELYPAVADHTIHFHQFERGTADRIRNRRVNERTGEEVTQGE
IVKGYDLGGGDHVLVEPDELDEIAPERSRRIDIEQFVELDEIDPWFFDKTYWLKPAKEDF
AKAYGLLLQAMDRSEKAGVAKFVLRGKEYLAAVRAGEGVMVLNTLHFVADLRKPKDVMGK
LPEVPKPRPKELDMALALVDEMTAPWKPEDYRDEYSQRVEELIKAKEAGKEIAHEEEPEP
SADVVDLFEALSRSVKNRKSGGKEPKKKAAKKPELAELSKSDLDKLAREQGVKGRSKMTR
AQLEKALKAS
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaccggtgtggagcggcgcactgagcctggggctggtcaccgtgccggtggag
ctgtacccggcggtggcggaccacacgatccacttccaccagttcgaacgcggcacggcg
gaccggatccgcaaccgccgcgtcaacgaacggaccggcgaggaggtcacccagggcgag
atcgtcaagggctacgacctcggcggcggcgaccacgtgctggtcgaaccggacgaactg
gacgagatcgcgcccgagcggtcgcgccggatcgacatcgagcagttcgtcgagctcgac
gagatcgacccgtggttcttcgacaagacctactggctcaagccggcgaaggaggacttc
gccaaggcgtacggcctgctgctgcaggcgatggaccgcagcgaaaaggccggcgtcgcg
aagttcgtgctgcgcggcaaggagtacctcgccgccgttcgcgccggtgaaggcgtcatg
gtgctcaacacgctgcacttcgtcgccgacctgcggaagccgaaggacgtcatgggcaag
ctgccggaggtgccgaaaccccggccgaaggagctcgacatggcgctggcgctggtcgac
gagatgaccgctccctggaaaccggaggactaccgcgacgagtactcccagcgcgtcgaa
gagctgatcaaggccaaggaagccggcaaagagatcgctcacgaagaggagccggagccc
tcggccgacgtggtggacctgttcgaggcgctgtcgcgcagcgtgaagaaccgcaagagc
ggcggcaaggaacccaagaagaaggcggcgaagaaacccgagctcgccgagctgtcgaag
tccgatctcgacaagctggcccgggaacagggcgtgaagggccggtcgaagatgacgcgc
gcccagctggagaaggcgctgaaggcgtcgtga
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