KEGG   Amycolatopsis mediterranei U32: AMED_5205
Entry
AMED_5205         CDS       T01269                                 
Name
(GenBank) DNA end-binding protein Ku
  KO
K10979  DNA end-binding protein Ku
Organism
amd  Amycolatopsis mediterranei U32
Pathway
amd03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:amd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AMED_5205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amd03400]
    AMED_5205
DNA repair and recombination proteins [BR:amd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AMED_5205
SSDB
Motif
Pfam: Ku Rho_N CPSase_L_D3
Other DBs
NCBI-ProteinID: ADJ46968
UniProt: A0A0H3DA62
LinkDB
Position
complement(5776644..5777576)
AA seq 310 aa
MARPVWSGALSLGLVTVPVELYPAVADHTIHFHQFERGTADRIRNRRVNERTGEEVTQGE
IVKGYDLGGGDHVLVEPDELDEIAPERSRRIDIEQFVELDEIDPWFFDKTYWLKPAKEDF
AKAYGLLLQAMDRSEKAGVAKFVLRGKEYLAAVRAGEGVMVLNTLHFVADLRKPKDVMGK
LPEVPKPRPKELDMALALVDEMTAPWKPEDYRDEYSQRVEELIKAKEAGKEIAHEEEPEP
SADVVDLFEALSRSVKNRKSGGKEPKKKAAKKPELAELSKSDLDKLAREQGVKGRSKMTR
AQLEKALKAS
NT seq 933 nt   +upstreamnt  +downstreamnt
atggcccgaccggtgtggagcggcgcactgagcctggggctggtcaccgtgccggtggag
ctgtacccggcggtggcggaccacacgatccacttccaccagttcgaacgcggcacggcg
gaccggatccgcaaccgccgcgtcaacgaacggaccggcgaggaggtcacccagggcgag
atcgtcaagggctacgacctcggcggcggcgaccacgtgctggtcgaaccggacgaactg
gacgagatcgcgcccgagcggtcgcgccggatcgacatcgagcagttcgtcgagctcgac
gagatcgacccgtggttcttcgacaagacctactggctcaagccggcgaaggaggacttc
gccaaggcgtacggcctgctgctgcaggcgatggaccgcagcgaaaaggccggcgtcgcg
aagttcgtgctgcgcggcaaggagtacctcgccgccgttcgcgccggtgaaggcgtcatg
gtgctcaacacgctgcacttcgtcgccgacctgcggaagccgaaggacgtcatgggcaag
ctgccggaggtgccgaaaccccggccgaaggagctcgacatggcgctggcgctggtcgac
gagatgaccgctccctggaaaccggaggactaccgcgacgagtactcccagcgcgtcgaa
gagctgatcaaggccaaggaagccggcaaagagatcgctcacgaagaggagccggagccc
tcggccgacgtggtggacctgttcgaggcgctgtcgcgcagcgtgaagaaccgcaagagc
ggcggcaaggaacccaagaagaaggcggcgaagaaacccgagctcgccgagctgtcgaag
tccgatctcgacaagctggcccgggaacagggcgtgaagggccggtcgaagatgacgcgc
gcccagctggagaaggcgctgaaggcgtcgtga

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