KEGG   Amycolatopsis mediterranei U32: AMED_5213
Entry
AMED_5213         CDS       T01269                                 
Symbol
sigB
Name
(GenBank) RNA polymerase sigma factor
  KO
K03090  RNA polymerase sigma-B factor
Organism
amd  Amycolatopsis mediterranei U32
Brite
KEGG Orthology (KO) [BR:amd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amd03021]
    AMED_5213 (sigB)
Transcription machinery [BR:amd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AMED_5213 (sigB)
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r3 Sigma70_r4_2 HTH_23 HTH_24 HTH_3 Sigma70_ECF HTH_Crp_2 HTH_31 MarR_2 MarR DUF7343 HTH_IclR KORA HTH_AraC GerE Phage_antitermQ
Other DBs
NCBI-ProteinID: ADJ46976
UniProt: A0A0H3D8K4
LinkDB
Position
5781690..5782481
AA seq 263 aa
MSSERKTLLHRPDEYAHCEPLFQELGSLDTADPRRDVVRSKLVTELLPLAEHIATRFSGR
GEPREDLVQVARIGLINAVDRFDPARGHDFLSFAVPTIMGEVRRHFRDTGWSVRVPRRLK
ELHLSLSQGSAVLSQRLGRAPTPTELAEHLNLDVDEVREGLLAGNAYQALSVDKPVHDDA
EALSLADTMGEPDHEMAMVENHEALQPLLQELPKRERAILVMRFFGGLTQTQIADRVGIS
QMHVSRLLSQTLEQLRGKLTGEG
NT seq 792 nt   +upstreamnt  +downstreamnt
gtgagcagcgagcggaaaaccctcctccaccgcccggacgaatacgcccactgcgaaccg
ctgttccaggaactgggcagcctcgacaccgctgatccgcgccgggacgtcgtccggagc
aagctcgtcaccgagctgctcccgctggccgagcacatcgcgacccggttctccggccgc
ggcgagccccgcgaagacctggtccaggtggcgcggatcggcctgatcaacgccgtcgac
cggttcgaccccgcccgggggcacgacttcctgtccttcgcggtgccgaccatcatgggc
gaggtccgccggcacttccgcgacaccggctggtccgtccgggtgccccggcggctcaag
gagctgcacctttcgctgagccagggctcggcggtgctctcccagcgcctgggccgtgcc
ccgacgccgaccgagctggccgagcacctgaacctcgacgtcgacgaggtccgcgaaggt
ctgctcgcgggcaacgcctaccaggcgctctcggtcgacaagccggtgcacgacgacgcc
gaggcgttgtcgctggccgacaccatgggggaaccggaccacgagatggccatggtcgag
aaccacgaggccctccagccgctgctgcaggaactgccgaagcgcgaacgcgcgatcctg
gtgatgcggttcttcggcgggctcacgcagacccagatcgccgaccgcgtcgggatctcc
cagatgcacgtctcccggctgctgtcgcagaccctggagcagctgcgcgggaagctcacg
ggcgagggctag

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