Amycolatopsis mediterranei U32: AMED_6686
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Entry
AMED_6686 CDS
T01269
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd03030
DNA replication
amd03430
Mismatch repair
amd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMED_6686 (holA)
03430 Mismatch repair
AMED_6686 (holA)
03440 Homologous recombination
AMED_6686 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amd03032
]
AMED_6686 (holA)
03400 DNA repair and recombination proteins [BR:
amd03400
]
AMED_6686 (holA)
Enzymes [BR:
amd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AMED_6686 (holA)
DNA replication proteins [BR:
amd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AMED_6686 (holA)
DNA repair and recombination proteins [BR:
amd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AMED_6686 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
DNA_pol3_gamma3
SutA-RBD
DUF6907
Motif
Other DBs
NCBI-ProteinID:
ADJ48412
UniProt:
A0A0H3DDV6
LinkDB
All DBs
Position
complement(7364089..7365069)
Genome browser
AA seq
326 aa
AA seq
DB search
MTAQATAPAPLQLVLGEEELLIERAVRETLAAARVMDATAELTRVRVSDLTAPELAELVS
PSLFSEGRVIVLESAQDISQELADAVAAYLKDPADGVVLVVVHTGGGRSKAGKSLPTALK
KAGAEITECPRLTKPAEREQFVRHEVRRVGGKIDPAGVAALLDAVGSDLRELSSAATQLV
ADTGGTVDADAVRRYHRGRADVTGFAVAEKAVSGDRAAALESLRWAMQLGVPHVLVADAL
ADAVRTIARVSGAGRGNPNQLAGELGMPPWKIRKAQGQSRGWNPDGLATAMRVVARLNAE
VKGVAADPGYALERAVLEVAAAKGDR
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgcgcaagccaccgccccggccccgctgcagctggtgctgggtgaggaagaactg
ctgatcgagcgggccgtccgcgagacgctcgccgccgcccgcgtgatggacgcgaccgcc
gagctgacccgggtccgggtgtccgatctcacagcgcccgagctggccgagctggtcagc
ccgtcgctgttcagcgaaggccgggtgatcgtcctggagtcggcgcaggacatctcgcag
gagctggccgacgccgtcgcggcttacctgaaggaccccgccgacggggtggtgctcgtc
gtcgtgcacaccggtggcggccgcagcaaggcgggcaagtcgctgccgacggcgctgaag
aaggccggcgccgagatcaccgagtgcccgagactgaccaagccggccgagcgggagcag
ttcgtgcgccacgaggtgcgccgggtgggcggcaagatcgacccggcgggggtcgccgcc
ctgctcgacgccgtgggctccgacctgcgggaactctcttcggcggcgacgcagctggtc
gcggacacgggcggcacggtcgacgccgacgcggtccgccgctaccaccgcggccgtgcc
gacgtcaccggcttcgcggtcgcggagaaggcggtcagcggcgaccgtgcggcggcgctg
gagtcgctgcgctgggcgatgcagctgggtgtcccgcacgtcctggtcgccgacgcgctg
gccgacgcggtccggacgatcgcccgggtctccggcgcgggccggggcaacccgaatcag
cttgcgggcgagctgggcatgccgccgtggaagatccgcaaggcacaggggcagtcccgc
ggctggaaccccgacggtctcgcgacggcgatgcgcgtggtcgcgcgactgaacgccgag
gtcaagggcgtggcggcggacccgggctacgcgctggagcgcgcggtcctcgaggtggcg
gcggccaagggcgaccgctga
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