Amycolatopsis mediterranei U32: AMED_6985 Help Entry AMED_6985         CDS       T01269                                  Symbol hrpA Name (GenBank) ATP-dependent helicase HrpA   KO K03578   ATP-dependent RNA helicase HrpA [EC:5.6.2.6] Organism amd  Amycolatopsis mediterranei U32 Brite KEGG Orthology (KO) [BR:amd00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:amd03019]     AMED_6985 (hrpA) Enzymes [BR:amd01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      AMED_6985 (hrpA) Messenger RNA biogenesis [BR:amd03019]  Prokaryotic type   Bacterial mRNA degradation factors    Other RNA degradation factors     Others      AMED_6985 (hrpA) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DUF3418 OB_NTP_bind Helicase_C HA2_C DEAD AAA_19 AAA_22 HA2_N nSTAND3 T2SSE NACHT AAA_23 SLFN-g3_helicase ABC_tran AAA_30 ResIII AAA_16 TsaE AAA_25 Motif Other DBs NCBI-ProteinID:  ADJ48704 UniProt:  A0A0H3DGB6 LinkDB All DBs Position complement(7718104..7722012) Genome browser AA seq 1302 aa AA seqDB search MSEPSPFHALRARLPELMPRDEQRLRRRLEGARKARDRDSALARIAADVDAAELRLRSRR ESVPKIEYPAELPVSKLKDEIAAAIDKHQVVIVAGETGSGKTTQLPKICLELGRGIRGQI GHTQPRRLAARTVADRIASELKTELGETVGYKVRFTDQSGQDTLVKLMTDGILLAEIQTD RSLRQYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFDDAP IVEVSGRTYPVEVRYRPLVDPENPAAPEGSGDADERDQTQGILDAVEELCAEGPGDILVF LSGEREIRDTADVLNRANLRNTEVLPLYARLSSAEQQRIFQSHTGRRVVLATNVAETSLT VPGIKYVVDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEAD FEARPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEPPDRRQVADGVGLLQELGAFA PGGSGSDRSLTDIGRKLAQLPVDPRMGRMVLEAARNGCVREVMIIAAALSIQDPRERPAE KQQAADAQHARFADPTSDFLAYLNLWEYVAEQQKALSGNQFRRMCRTEYLNYLRLREWQD IFSQLRQLAKPLGISLNTNTAPADPQRVHTSLIAGLLSHIGLKDPAKGDYLGARGARFGV FPGSALFKKQPRWVMSAELVETSRLWARVNARIEPEWVEPLAGHVVKRSYSEPHWERKQG AVMAIEKVTLYGVPLIADRRVNYGRIDPELSRALFIRHALVEGDWQTRHHFFAENRALLE EVEDLENRARRRDILVDDQTLYEFYDARVPADVVSVRHFDSWWKKARHTEPDLLSFEKSM LINESAGGVREGDYPDSWTQGTQVFKLTYQFEPGADADGVTVHIPLPVLNQVTPDGFDWQ VPGLRAELVTQLIKSLPKAVRRNFVPAPDTAREVLSRVSPSDGPLLEVLGRELRALRGIT VPYADWDLSSVPEHLKMTFRVVDERGRRVAEGKDVAELQRRLAPKVRETISKAANTLEKA GLTKPSFGSLPEVFSSHQRGHDVKAYPALVDEGATVAVRLLDTPAQQEHAMWAGTRRMLR LNLNSPMKFITRSLSNSSKLVLNRNPHGSVAALLEDCVDCAVDALMAAGGGPAFDETGFK VLLEKVRAGLHPAVLDVLTEVEKILRAANDVEVQLSSSRGPAESLADIRAQLTALVYPGF VTETGASRLRNVVRYLQGISRRLEKLVSEPTRDLQRTADIAWIQGEYADALASLPPGTSS PELREVRWMIEELRVSFFAQTLGTAHPVSLKRITKALDDALA NT seq 3909 nt NT seq  +upstreamnt  +downstreamnt atgtccgagccatcccccttccacgcgctgcgagcgcgcctgcccgagctcatgccgcgt gacgagcagcggctgcgccgccggctcgagggcgcccgcaaagcccgtgaccgtgacagc gccctcgcgcggatcgccgccgacgtcgacgccgccgagctgcgcctgcggtcgcggcgc gaaagcgtgcccaagatcgagtaccccgccgagctgccggtcagcaagctcaaggacgag atcgccgccgccatcgacaagcaccaggtcgtgatcgtcgcgggggagaccggctcgggc aagaccacccagctgccgaagatctgcctggagctcgggcgcggcatccgcggccagatc gggcacacgcagccgcggcggctggccgcgcgcacggtcgccgaccgcatcgcgagcgaa ctgaagaccgagctcggcgagaccgtcggctacaaggtgcggttcaccgaccagtccggg caggacacgctggtcaagctgatgaccgacggcatcctgctggccgagatccagaccgac cggtcgctgcgccagtacgacacgctgatcatcgacgaggcccacgagcgcagcctcaac atcgacttcatcctcggctacctcaagcagctgctgccgcgccgccccgacctcaaggtg atcatcacctcggcgacgatcgacccggaacggttctcgaagcacttcgacgacgcgccg atcgtcgaggtctccggccggacgtacccggtcgaggtgcgctaccggccgctcgtcgac cccgaaaatccggcagctcccgaaggctccggagacgccgacgagcgcgaccagacccag ggcatcctcgacgccgtcgaggagttgtgcgccgagggccccggcgacatcctggtgttc ctgtccggcgagcgcgagatccgcgacaccgccgacgtgctcaaccgggcgaacctccgc aacaccgaggtgctgccgctgtacgcgcggctttcgtcggccgagcagcagcgcatcttc cagtcccacaccgggcgccgggtggtgctcgcgaccaacgtcgccgagacgtcgctgacc gtgccgggcatcaagtacgtcgtcgacccgggcaccgcgcggatctcccgctacagccac cgcaccaaggtgcagcggttgccgatcgaaccggtgtcgcaggcgtcggcgaaccagcgc aagggccgctgcggccggacgtcggacggcatctgcatccggctctactccgaagcggac ttcgaggcgcggcccgagttcaccgatccggagatcctgcggaccaacctcgcctcggtc atcctgcagatgacgtcgctgggcctcggcgacatcgcggcgttcccgttcgtcgaaccg ccggaccgccgccaggtcgccgacggcgtcggcctgctgcaggagctgggcgcgttcgcg ccgggcggttccgggtccgatcgcagcctgaccgacatcggacgcaagctcgcgcagctg ccggtcgacccgcggatgggccggatggtgctggaggcggcccgcaacggctgcgtccgc gaggtgatgatcatcgcggccgcactgtccatccaggacccgcgggaacggccggccgag aagcagcaggccgcggacgcccagcacgcgcggttcgccgatccgacgtcggacttcctg gcctacctgaacctctgggagtacgtcgccgagcagcagaaggcgttgtccggcaaccag ttccggcgcatgtgccgcaccgagtacctgaactacctgcggctgcgcgagtggcaggac atcttcagccagctgcgtcagctggccaagccgctcggcatctcgctgaacacgaacacg gccccggccgacccgcagcgcgtgcacacgtcgctgatcgccgggctgctctcgcacatc gggctcaaggacccggcgaagggcgactacctcggcgcgcgcggcgcccggttcggcgtg ttcccgggctcggcgctgttcaagaagcagccgcgctgggtgatgtcggcggagctggtc gagacgtcgcggctgtgggcgcgggtcaacgcgcgcatcgaacccgagtgggtggagccg ctggccgggcacgtcgtcaagcggtcctattccgagccgcactgggaacgcaagcagggc gcggtgatggcgatcgagaaggtgacgctgtacggcgtcccgctgatcgccgaccgccgc gtcaactacggccggatcgacccggagctgtcgcgggcgctgttcatccggcacgcgctg gtcgagggcgattggcagacgcggcaccacttcttcgccgagaaccgggcgctgctggag gaggtcgaagacctcgagaaccgcgcgcggcggcgtgacatcctggtcgacgaccagacg ctgtacgagttctacgacgcgcgggtcccggcggacgtcgtgtcggtgcgccacttcgac agctggtggaagaaggcccggcacaccgaacccgacctgttgtcgttcgagaagtccatg ctcatcaacgagtccgccggcggcgtccgcgagggcgactacccggactcgtggacgcag ggcacgcaggtcttcaagctgacctaccagttcgagccgggcgcggacgccgacggcgtc accgtgcacatcccgctgccggtgctcaaccaggtgacgccggacgggttcgactggcag gtgccggggctgcgggcggaactggtcacgcagctgatcaagtcgctgccgaaggcggtg cgccgcaacttcgtcccggcgccggacacggcccgggaagtcctttcgcgagtgtcccct tcggacggtccgctgctggaggtgctcggccgcgagctgcgtgccctgcgcgggatcacg gtgccgtacgcggactgggacctgtcttcggtgccggagcacctgaagatgacgttccgg gtggtcgacgagcggggtcgccgcgtggccgagggcaaggacgtggcggagctgcagcgc cgcctggccccgaaggtccgcgagacgatctccaaggcggccaacaccctggagaaggcg ggcctgacgaagccgtcgttcggttcgttgccggaggtgttctcctcgcaccagcgtggg cacgacgtcaaggcgtacccggcgctggtggacgagggcgcgacggtggcggtgcggctg ctggacacgccggcccagcaggaacacgcgatgtgggcgggcacccggcggatgctgcgg ctgaacctgaactcgccgatgaagttcatcacgcggtcgctgtccaattcgtcgaagctg gtgctcaaccggaacccgcacggcagcgtggcggcgctgctcgaggactgcgtcgactgc gcggtggacgccctgatggccgcgggcggcggcccggcgttcgacgagaccggcttcaag gtgctgctggagaaggtccgggcgggcttgcacccggcggtgctggacgtgctgaccgag gtggagaagatcctgcgcgcggcgaacgacgtcgaggtgcagctgtcctcgtcgcgcggc ccggcggagtccttggcggacatccgggcccagctgacggcgctggtgtatccgggtttc gtgacggagacgggcgcttcgcgactgcgcaacgtggtccggtacctgcagggaatttcc cgacggctggagaagctggtttcggagccgacgcgcgacctgcagcgcacggcggacatc gcgtggatccagggcgagtacgccgacgcgctggcttcgctgccaccgggaacgtcgtcc ccggagctgcgcgaggtgcggtggatgatcgaggagctgcgggtttcgttcttcgcccag acactggggacggcgcacccggtgtcgttgaagcggatcacgaaggccctggacgacgcc ctggcctga

DBGET integrated database retrieval system