Amycolatopsis mediterranei U32: AMED_7792
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Entry
AMED_7792 CDS
T01269
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMED_7792 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amd03021
]
AMED_7792 (rho)
03019 Messenger RNA biogenesis [BR:
amd03019
]
AMED_7792 (rho)
Transcription machinery [BR:
amd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AMED_7792 (rho)
Messenger RNA biogenesis [BR:
amd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AMED_7792 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
NACHT
FANC_SAP
Motif
Other DBs
NCBI-ProteinID:
ADJ49500
UniProt:
A0A0H3DEZ6
LinkDB
All DBs
Position
complement(8567250..8569253)
Genome browser
AA seq
667 aa
AA seq
DB search
MSNTDLLSDVGSDTAGSNGTAPAPKRAVGGLTGKTVAELRSLAGELGVGETTGMRKGDLI
AAIRERQGKSRKPRAAAETLPLDGVGEPPKAAPKAKAEAPAAPAETKPEPKAEAPASAPS
DAPPQAERPQQDRQDTPQGQDGQSEEGGRSRRRRGSNRAAGSPDTQQGGDRQQGQGDRQQ
GGDRQQGQGDRQQGQGGDRQQGDRNRDQQRQGGGNRGDNRNDNRQDGNRQRNNQQDGNRG
GQDNRNQQPDDDEEGGRRGRRFRDRRRRGSGGGQREGGSPDTEIRDDDVLLPVAGILDVL
DNYAFVRTSGYLAGPNDVYVSLSLVRKYGLRRGDAITGVVRQPRDGEQQRQKFNPLVRVD
SINGLEPDEAKRRPDFTKLTPLYPNERLRLETESHKLTTRVIDLIMPVGKGQRALIVSPP
KAGKTTIMQDIANAISTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPADHT
SVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRF
LGAARNIENGGSLTIFATAMVETGSTMDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDV
NPSGTRKDELLLNPDELAVTVKLSRVLHALDSQQAIDLLISRLRKTKTNVEFLMQVSKTA
LGGGEDD
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacaccgatcttttgagcgacgtgggtagcgacacggccggttcgaacggcacg
gcccccgctcccaagcgggcggtcggcgggctgaccggaaagaccgtcgccgaactgcgt
tcgctggctggggagctcggcgtcggcgagacgacgggcatgcgcaagggcgatctgatc
gccgcgatccgtgagcgccagggcaagtcccgcaagccgcgtgcggcggccgagacgttg
ccgctggacggcgtcggcgagccgccgaaggcggccccgaaggcgaaggccgaggcgccc
gccgctccggcggagaccaagccggagccgaaggccgaggcgcccgcctccgcgccgtcg
gacgccccgccgcaggccgagcgcccgcagcaggaccggcaggacaccccgcagggccag
gacggccagtccgaggagggcggccgcagccggcgtcgccgcgggtccaaccgggccgcc
ggatcgcccgacacccagcagggcggcgaccgtcagcagggccagggcgaccgtcaacag
ggcggcgaccgccagcagggtcagggtgaccgtcagcagggtcagggcggcgaccgccag
cagggcgaccgcaaccgcgaccagcagcgccagggcggtggcaaccgcggcgacaaccgg
aacgacaaccgccaggacggcaaccgtcagcgcaacaaccagcaggacggcaaccgcggc
gggcaggacaaccgcaaccagcagccggacgacgacgaggaaggcggccgtcgcggccgt
cgcttccgcgaccgtcgtcgccggggcagcggtggcggccagcgcgagggcggttcgccg
gacaccgagatccgcgacgacgacgtcctgctgcccgtggcgggcatcctggacgtgctc
gacaactacgcgttcgtgcggacctccggctacctcgccggcccgaacgacgtgtacgtc
tcgctgtcgctggtccgcaagtacggcctgcgccgcggtgacgccatcaccggtgtcgtg
cgccagccgcgtgacggcgagcagcagcggcagaagttcaacccgctggtgcgcgtcgac
tcgatcaacggcctggagcccgacgaggccaagcgccgtccggacttcaccaagctgacc
ccgctgtacccgaacgagcggctgcgcctcgagaccgagtcgcacaagctcaccacccgc
gtgatcgacctgatcatgccggtcggcaaggggcagcgcgccctgatcgtctcgccgccg
aaggccggcaagaccacgatcatgcaggacatcgcgaacgcgatctccacgaacaacccc
gagtgccacctgatggtcgtcctggtcgacgagcgtccggaagaggtcaccgacatgcag
cgctcggtgaagggcgaggtcatcgcctcgaccttcgaccggccgccggccgaccacacc
tcggtcgcggagctgtccatcgagcgggccaagcgcctggtcgagatgggccacgacgtc
gtcgtgctgctcgactcgatcacccgactgggccgggcctacaacctggcggctccggcg
tccggccggatcctgtccggtggtgtcgactcgaccgcgctctacccgccgaagcggttc
ctcggcgcggcgcgcaacatcgagaacggcggctcgctgaccatcttcgccacggcgatg
gtggaaaccggctcgacgatggacacggtcatcttcgaggagttcaagggcaccggtaac
gcggagctcaagctcgaccggaagatcgccgagcgccgggtgttcccggccgtcgacgtc
aacccgtccggtacccgcaaggacgagctgctgctgaacccggacgagctggccgtgacc
gtgaagctgagccgggtgctgcacgcgctcgactcgcagcaggccatcgacctgctgatc
tcgcggctgcgcaagaccaagaccaacgtcgagttcctcatgcaggtctcgaagaccgcc
ctcggtggcggcgaagacgactga
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