Amycolatopsis mediterranei U32: AMED_8425
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Entry
AMED_8425 CDS
T01269
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
amd
Amycolatopsis mediterranei U32
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amd03400
]
AMED_8425 (phrB)
Enzymes [BR:
amd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
AMED_8425 (phrB)
DNA repair and recombination proteins [BR:
amd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
AMED_8425 (phrB)
Prokaryotic type
AMED_8425 (phrB)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
ADJ50121
UniProt:
A0A0H3DHD2
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All DBs
Position
complement(9262490..9263836)
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AA seq
448 aa
AA seq
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MTREAPVVLWFRRDLRLGDHAALLEASRHSKHVLALYVLDEALLKPGGAPREAFLYGCLE
KLNEQLGGRLMLVRGEPAAEVVKAAKKIGAAAVHVSADTGPYGRRRDASVAKALAEHNIE
WVETGSSYAVTPGRVTKPDGSPYRVFTPFFRAWTARGWHSPADTGPSLVDWVEPPRSLKI
PKAPAVSATLPEPGEQAALDVWHEFLDDGIETYDEDRDRPDREGTTRLSPYLRWGCIHPR
TILADLAGDDRVGAKSLRSEICWREFHADVLWHRPETARENYDHRFDGMKYDDDREAFER
WCAGRTGYPIVDAGMRQLLAEGWMHNRVRMVVASFLVKDLHLPWWLGARHFMKHLVDGDL
ASNQLNWQWVAGCGTDAAPYFRIFNPTTQGEKFDPAGDYVRKYVPELRSVPGKAVHQLKD
RPEGYPEPMVDHAHERQVSLERYGKITS
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
gtgactcgagaagcgccggtcgtcctgtggttccgccgtgacctgcggctcggcgaccac
gccgcgctgctggaggcgtcgcgccacagcaagcacgtgctcgcgctgtacgtcctcgac
gaagcactgctgaagcctggtggcgcgccgcgggaagcgttcctctacggctgcctggag
aagctgaacgagcagctcggcggccggctgatgctggtccgcggcgaaccggcggccgaa
gtcgtgaaggcggcgaagaagatcggtgcggccgcggtgcacgtcagcgccgacaccggg
ccctacggtcgccgccgggacgcttcggtggcgaaagcgttggcggagcacaacatcgag
tgggtcgagacgggctcgtcgtatgccgtgacgccgggccgcgtcaccaagccggacggc
agcccgtaccgcgtcttcacgccgttcttccgcgcctggaccgcccgcggctggcattca
cccgccgacaccggtccgtcccttgtggactgggtggaaccgccgcggtcgctgaagatc
ccgaaggcgcccgccgtctccgcgacgctgcccgagcccggcgagcaggccgcactcgac
gtctggcacgaattcctggacgacggcatcgagacctacgacgaggaccgcgaccggccg
gaccgtgaaggcaccacccggctgtcgccgtacctgcgctggggctgcatccacccgcgg
acgatcttggccgacctggcgggtgacgaccgcgtcggcgcgaagtcgctgcgcagcgag
atctgctggcgcgagttccacgccgacgtcctgtggcaccgcccggaaaccgcgcgtgag
aactacgaccaccgcttcgacgggatgaagtacgacgacgaccgcgaggccttcgagcgg
tggtgcgcgggtcgcaccggttacccgatcgtggacgccgggatgcggcagctgctggcc
gagggctggatgcacaaccgggtgcggatggtcgtcgcgagcttcctggtgaaggacctg
cacctgccgtggtggctgggcgcccgccacttcatgaagcacctggtggacggcgacctg
gcgtcgaaccagctgaactggcagtgggtcgcgggctgcggcaccgacgcggcaccgtac
tttcgcatcttcaacccgacaacccagggcgagaagttcgacccggccggcgactacgtg
cgcaagtacgtgccggagctgcgctcggtgcccggcaaggcagtgcaccagctgaaggac
cgccccgagggatacccggaacccatggtcgaccacgcccacgagcgccaggtgtccttg
gaacggtacggcaagatcacctcgtga
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