Amycolatopsis mediterranei U32: AMED_8879
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Entry
AMED_8879 CDS
T01269
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
amd
Amycolatopsis mediterranei U32
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amd03016
]
AMED_8879
Enzymes [BR:
amd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AMED_8879
Transfer RNA biogenesis [BR:
amd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AMED_8879
Prokaryotic type
tRNA splicing ligases
AMED_8879
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADJ50570
UniProt:
A0A0H3DI45
LinkDB
All DBs
Position
complement(9730707..9731897)
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AA seq
396 aa
AA seq
DB search
MYTAVEGARVPIRMWADPASVEDQAMRQLHNVANLPWVHGVAVMPDVHYGKGATVGSVIA
MRDAVSPAAVGVDIGCGMSAVRTSLTASDLPDDLGKLRRRIESAVPVGFGLHKTPVNPAK
VHGVGGWDAFWKQFGELHTGVQELHDRAARQIGSLGGGNHFIEVCLEEGGAEEGRVWLML
HSGSRNIGKELAERHMAVARKLPHNADLPDRDLAVFVAGTPEMQAYRRDLFWAQEYAARN
RATMVALVKLALADVVPGTTFDDAISCHHNYVAEETYDGVELLVTRKGAIRAGSGDLGII
PGSMGTGSYIVRGLGNDSSFQSASHGAGRRMSRTKAKTLFTADDLAAQTAGVECRKDSGV
VDEIPAAYKDIETVIQAQTDLVEVVAHLKQVVCVKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtacaccgctgtcgaaggggcccgcgtcccgatccggatgtgggcggatcccgcttcc
gtcgaagaccaggccatgcggcagctgcacaacgtcgcgaacctgccgtgggtgcacggc
gtcgccgtgatgcccgacgtccactacggcaagggggccaccgtcggcagcgtcatcgcc
atgcgcgacgccgtctcgcccgccgccgtcggggtcgacatcggctgcgggatgagcgcc
gtccggacgtcgctcaccgcgagcgatctgcccgacgacctcgggaagctgcgccggcgc
atcgaaagcgccgtgcccgtcgggttcgggctgcacaagacgccggtgaacccggcgaag
gtgcacggcgtcggcggctgggacgcgttctggaagcagttcggcgagctgcacaccggc
gtccaggagctgcacgaccgggccgcgcggcagatcgggagcctcggcggcgggaaccac
ttcatcgaggtctgcctcgaggaaggcggtgccgaagagggccgggtctggctgatgctg
cactcgggttcgcgcaacatcggcaaggagctggccgagcggcacatggccgtcgcgcgc
aagcttccgcacaacgccgacctgcccgaccgcgacctcgcggtgttcgtcgcgggcacg
ccggagatgcaggcctaccggcgcgatctgttctgggcgcaggagtacgcggcgcgcaac
cgggccacgatggtcgcgctggtgaagctggcgctcgcggacgtcgtgccgggcacgacc
ttcgacgacgcgatctcgtgccaccacaactacgtcgccgaagagacctacgacggcgtc
gagctgctcgtcacccggaagggcgcgatccgcgccggatcgggtgacctcgggatcatc
ccgggcagcatggggaccggttcgtacatcgtccgcgggctgggcaacgactcgtcgttc
cagtcggcttcgcacggcgccgggcggcggatgtcgcgcaccaaggccaagacgctgttc
accgccgacgacctcgcggcgcagacggcaggcgtcgaatgccgcaaggactccggcgtg
gtcgacgagatcccggcggcctacaaggacatcgaaacggtgatccaggcccagacggac
ctggtcgaggtcgtggcgcacctcaagcaggtggtctgcgtcaagggctga
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