Amycolatopsis mediterranei U32: AMED_9292
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Entry
AMED_9292 CDS
T01269
Symbol
nfo
Name
(GenBank) deoxyribonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AMED_9292 (nfo)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amd03400
]
AMED_9292 (nfo)
Enzymes [BR:
amd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
AMED_9292 (nfo)
DNA repair and recombination proteins [BR:
amd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
AMED_9292 (nfo)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Staphylcoagulse
Motif
Other DBs
NCBI-ProteinID:
ADJ50980
UniProt:
A0A0H3DJE1
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All DBs
Position
complement(10150921..10151703)
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AA seq
260 aa
AA seq
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MLGMLIGAHVRDDDPLPAVVERKAEVVQFFLSDPQGWKAPKPHPHGEAIKADPVEVFIHS
PYLINVASLNNRIRIPSRKNVTQHADGAAAIGAKGLIVHGGHVGANDDAEAGLDNWRKLF
EREQEKGGFKVPILIENTAGGENAMTRDLDVIARLWDKVGEFGAGFCLDTCHAFAAGWDL
ATAVGRVKAITGRIDLVHLNNSRDEFGSTRDRHANVVQGDGTIDPEVLVAVAREAGAPVV
VETPADGQAADIAYLREQLG
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
gtgctcggcatgctgattggcgcccatgtccgtgacgacgacccgttgcccgcggtcgtc
gagcgcaaagccgaagtcgtccagttcttcctctccgacccgcagggctggaaggccccg
aagccgcatccgcacggcgaagccatcaaggccgacccggtcgaggtgttcatccactcg
ccgtacctcatcaacgtggcttcgctgaacaaccggatccggatcccgtcccgcaagaac
gtcacccagcacgcggacggtgcggccgcgatcggcgcgaagggcctgatcgtgcacggc
gggcacgtcggggcgaacgacgacgccgaggccggcctggacaactggcgcaagctgttc
gagcgggagcaggagaagggcggcttcaaggtcccgatcctgatcgagaacaccgccggc
ggcgagaacgcgatgacccgcgacctcgacgtcatcgcccggctgtgggacaaggtcggc
gagttcggcgccgggttctgcctcgacacctgccacgcgttcgccgcgggctgggacctg
gcgaccgccgtcggacgagtcaaggccatcaccggccggatcgacctggtgcacctcaac
aactcccgcgacgagttcggctcgacccgcgaccggcacgccaacgtcgtgcagggcgac
gggacgatcgaccccgaggtgctggtcgccgtcgcccgcgaggcgggcgccccggtcgtc
gtcgagacgccggccgatgggcaggccgccgacatcgcctacctgcgggaacagctcggt
tag
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