Amycolatopsis mediterranei U32: AMED_9346
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Entry
AMED_9346 CDS
T01269
Symbol
pcnB
Name
(GenBank) poly(A) polymerase
KO
K00974
tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:
2.7.7.72
3.1.3.- 3.1.4.-]
Organism
amd
Amycolatopsis mediterranei U32
Pathway
amd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMED_9346 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amd03016
]
AMED_9346 (pcnB)
Enzymes [BR:
amd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.72 CCA tRNA nucleotidyltransferase
AMED_9346 (pcnB)
Transfer RNA biogenesis [BR:
amd03016
]
Eukaryotic type
3'processing and CCA adding factors
CCA adding factors
AMED_9346 (pcnB)
Prokaryotic type
AMED_9346 (pcnB)
BRITE hierarchy
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Paralog
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Motif
Pfam:
PolyA_pol
PolyA_pol_RNAbd
HD
tRNA_NucTran2_2
Motif
Other DBs
NCBI-ProteinID:
ADJ51034
UniProt:
A0A0H3DMY2
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All DBs
Position
complement(10213417..10214853)
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AA seq
478 aa
AA seq
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MNDVVEKQVVELMQVSPLAEELAERFARAGHRLYLVGGSVRDALLGRRSGDLDFTTDARP
DRVLKIVSGWGDAVWDVGIAFGTVGVTKKGMQLEITTFRADSYDRVGRNPEVTFGDSIEG
DLLRRDFTVNAMAVDLASKTFIDPHDGLSALRERVLDTPATPQESFADDPLRMLRAARFA
AQLDFAAAPRVVDAMTSMAEEIDRITAERVQAELSKLLLAADPRPGLELLVDTGLADRVL
PEVAGMRLAIDEHHQHKDVYQHSLTVLAQAIDLESSHEPTSEPDLILRLAALLHDVGKPA
TREFQEGGGVSFHHHEVVGARMARKRLRALKFSKEIVDDVSQLVFLHLRFHGYGKGEWTD
SAVRRYVTDAGPLLTRLHKLVRADCTTRNRRKAAVLQATYDDLEARIAALKAKEDLDRVR
PDLNGEQIMALLGLKPGPDVGKAWKFLKELRLDRGPLDHDEAVAELKKWAAENGVGDA
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgacgtggtcgagaagcaggtggtggagctgatgcaggtctccccactggcggag
gaactggcggagaggttcgccagggcgggacaccgcctctacctcgtgggcggcagcgtg
cgcgacgcactgctcggccgccgctccggcgacctcgacttcaccacggacgcgcggccc
gaccgggtgctgaagatcgtcagcggctggggcgacgcggtctgggacgtcgggatcgcc
ttcggcacggtcggcgtgacgaagaagggcatgcagctcgagatcaccacgttccgcgcc
gacagctacgaccgcgtcggccgcaaccccgaggtcaccttcggcgacagcatcgagggc
gacctgctgcgccgcgacttcacggtcaacgcgatggccgtcgacctggcgtccaagacg
ttcatcgacccgcacgacgggctgagcgccctgcgcgagcgggtcctggacaccccggcg
acgccgcaggagtcgttcgccgacgacccgctgcggatgctgcgagcggcccgcttcgcc
gcgcagctggacttcgccgccgcgccgcgggtggtcgacgcgatgacgtcgatggccgag
gagatcgaccggatcaccgccgagcgggtgcaggccgagctgtcgaagctgctgctggcg
gccgacccgcggccggggctggagctgctggtcgacaccgggctggccgaccgggtgctg
cccgaggtggccgggatgcggctggcgatcgacgagcaccaccagcacaaggacgtctac
cagcactcgctgaccgtgctcgcccaggcgatcgacctggagtcttcgcacgagccgacc
tccgagcctgatctgatcctgcggctggccgccctgctgcacgacgtcggcaagccggcg
acccgggagttccaggagggcggcggcgtcagcttccaccaccacgaggtggtcggtgcg
cggatggcccgcaaacgtttgcgggcgctgaagttctcgaaggagatcgtcgacgacgtc
tcccagctcgtgttcctccacctgcggttccacggctacggcaaaggtgagtggacggac
tcggcggtccgccggtacgtcaccgacgccgggcccctgctgacccggctgcacaagctg
gtccgcgccgactgcaccacccgcaaccgccggaaggcggccgtgctgcaggcgacctac
gacgacctcgaggcccggatcgccgcgctcaaggccaaggaggacctcgaccgcgtgcgg
ccggacctcaacggcgagcagatcatggcgctgctcggcctcaagccgggcccggacgtc
gggaaggcgtggaagttcctcaaggagctgcgcctggaccgcgggccgctggaccacgac
gaggcggtcgccgagctgaagaagtgggccgcggaaaacggcgtcggggacgcgtga
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