Apis mellifera (honey bee): 408840
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Entry
408840 CDS
T01057
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ame
Apis mellifera (honey bee)
Pathway
ame03008
Ribosome biogenesis in eukaryotes
ame03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ame00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
408840
09123 Folding, sorting and degradation
03018 RNA degradation
408840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ame03021
]
408840
03019 Messenger RNA biogenesis [BR:
ame03019
]
408840
03009 Ribosome biogenesis [BR:
ame03009
]
408840
03016 Transfer RNA biogenesis [BR:
ame03016
]
408840
Transcription machinery [BR:
ame03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
408840
Messenger RNA biogenesis [BR:
ame03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
408840
Ribosome biogenesis [BR:
ame03009
]
Eukaryotic type
Pre-60S particles
RNases
408840
Transfer RNA biogenesis [BR:
ame03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
408840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
408840
NCBI-ProteinID:
XP_392371
BEEBASE:
GB44445
UniProt:
A0A7M7R598
LinkDB
All DBs
Position
LG5:9722200..9750791
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AA seq
948 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIVECIEQKPITTNGIRVPVNSAEPNPNGIEFDNLYLDMNGIIH
PCTHPEDRPAPQNEDEMMEAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKEANEKINEIKRIRSELSLKGASLPPEKPKEEHFDSNCITPGTPFMARLSKCLHYYIH
DRLNNDPGWRNIKVILSDANVPGEGEHKIMDFIRRQRAQPDHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKPNKPKPCDICGQLGHEMQECTGAEPNQREEANPFGSECQYIFV
RLNVLREYLERELQMPNLPFKYDFERVIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLV
NLYKKTVYKTGGFLTDSGDVNLDRVQLIMSELGDVEDEIFKKRQQNELAYKQREKDKKRR
LLGISNNKPKWIPTGQFAPTRIGEHIKPVQNARYEAYQMRIHGQNYHTSEKGNAKEMLES
MIRPENSTDHERKRKSEVVEDDSDDDQSHDEVRLWEDGFKDRYYESKFDVSPDNLVFRNN
VALQYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFINIGGLSTEFEKGTIPFRPLEQ
LMGVFPAASSKHVPAPWAKLMSDPKSPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKR
LFKALEPYYDCLTEAEKIRNVRGDDRLYVGLGNSGYNFMKGLYTNHVRSDAETSICIDGM
RGTVLLTDDCVGDGATLPSPINGLLPIRNNKVYCIKFRDPKYSSNFIFPAKKLKGVREPP
KVLKPQDFDQMNRNTGNTWKPQIGFTSSTQIASLTEAGKRILGHYTNHNRVPPSYNPIPI
PQTLYPQHHGYQSTNYQGGYDPGHNQQAMVPGPWARGYGTPHNYHQRYPEYQQKNNYNVQ
QYGRNNYQNPQYNSYGSQYNQQRNYSSNYQGNSGESGGSRGGGWRRST
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccagcattttttagatggttgagtcgaaaatatccttctgtaatagtagaa
tgtatcgagcagaagccgataactacaaatggtatacgagtaccagtgaattcggcagaa
ccaaatccaaatggaatagaatttgataatttataccttgatatgaatggtattatacat
ccttgtactcatcctgaagatagacctgcaccacaaaatgaggatgaaatgatggaagct
atttttgaatgcattgaccgtttatttcgcattgtaagaccaagaaaattactttacatg
gcaattgatggagttgcacctagagcaaaaatgaatcaacaaagatcaagacgatttaga
gcatcaaaagaagcaaatgaaaaaattaacgaaataaaaagaatacgttctgaattatct
cttaaaggagcatctttacctcctgaaaaaccaaaagaagagcattttgatagcaattgc
attacaccgggcacaccatttatggcaagattatcaaaatgtttgcattattatatacat
gaccgtttaaacaatgatcctggatggagaaatataaaagtaattttgagcgatgcaaat
gtgccaggagaaggagaacataaaataatggattttatacgtagacaaagagcacaacct
gatcatgatcctaatacacaacacgttttatgtggagctgatgctgatttaattatgttg
ggtcttgcaactcatgaacctaattttactattattcgtgaagagtttaagccaaataaa
ccaaaaccatgtgatatatgtggtcaattaggacatgaaatgcaggaatgtacgggtgca
gagcctaatcagagggaagaagcgaatccttttggatctgaatgccagtacatatttgtg
cgattaaatgtactcagagaatatttagaaagagaattgcaaatgcctaatctaccattt
aaatacgatttcgagcgagttatcgatgattgggtgttcatgtgtttcttcgtaggaaac
gattttcttcctcaccttccatctttggaaattagagaaggggcaatagatagacttgtt
aatttatataaaaaaacagtatataaaacaggaggatttttaacagatagtggagatgtt
aatttagacagagttcaactgataatgtctgaattaggcgatgttgaagatgaaattttc
aagaaaaggcaacaaaatgaattagcctacaaacaacgtgaaaaagataaaaaaagaaga
ttattgggaattagtaataataaaccaaaatggattcccacgggacaatttgcaccgacg
cgtattggtgaacatatcaaaccagtacaaaatgcacgttatgaagcttaccaaatgcgt
attcatggtcaaaattatcatacaagtgaaaaaggaaatgctaaggagatgttagaaagt
atgatacgtcctgaaaattcgactgatcatgaacgaaaacgaaaaagtgaagtagttgaa
gatgattcagatgatgatcaatctcacgatgaagttagattatgggaagatggttttaaa
gatcgttattatgaatcaaaatttgatgtatctcctgataatttggtattcagaaataat
gtggcattgcaatatgtgcgtggtttgtgttgggttttacgatattattatcaaggttgt
gcttcatggaaatggtattttccgtatcattatgctccatttgctagcgatttcatcaat
attggtggtctttctaccgaatttgaaaagggaactataccattccgtccattagaacaa
ttgatgggtgtatttccagcggctagtagtaaacacgttcctgcaccgtgggcaaaatta
atgagtgatccaaaatcaccaattattgatttttatccagaagattttaaaattgattta
aatggtaaaaaatttgcttggcaaggggtagctttacttccttttgtggatgaaaaacgt
ttattcaaggcactagagccatattacgattgtttgacagaggcagaaaaaatacgaaat
gttcgaggagacgatcgattatatgtaggactcggtaatagcggttataattttatgaag
ggactttatacgaatcacgtacgatccgatgcagaaacttcaatatgtatagatggtatg
cgaggtacggttttattgacagatgattgtgtcggagacggagctactttaccttcgccc
ataaacggattattaccaattaggaataataaagtgtattgtattaaattcagagatcca
aaatatagtagtaattttattttccctgcgaaaaaattgaagggtgttagagaaccacca
aaagttttaaaacctcaagattttgatcaaatgaatcgtaacactggaaatacttggaaa
ccacaaattggtttcacttcctcgacacaaatagcttcattaactgaggcaggcaaaaga
atacttgggcattatacgaatcataatagagtgccaccgtcatacaacccaataccaata
ccacaaacgttatatccacagcatcacggttaccaaagtacgaattatcaaggaggttac
gatccaggacataatcagcaggcgatggttcctggtccatgggcaaggggatacggcact
ccgcacaattatcatcaacggtatccggaatatcagcaaaagaataattacaacgtccag
caatacgggcgaaataattatcaaaatccacaatataatagttatggttcgcagtataat
caacaacggaattattcttctaactaccaagggaatagtggtgaaagtgggggaagtagg
ggaggaggatggagacggtcaacgtag
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