Apis mellifera (honey bee): 409322
Help
Entry
409322 CDS
T01057
Name
(RefSeq) uncharacterized protein LOC409322 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ame
Apis mellifera (honey bee)
Pathway
ame03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ame00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
409322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ame03021
]
409322
03019 Messenger RNA biogenesis [BR:
ame03019
]
409322
Transcription machinery [BR:
ame03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
409322
Messenger RNA biogenesis [BR:
ame03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
409322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
409322
NCBI-ProteinID:
XP_026302183
BEEBASE:
GB55641
UniProt:
A0A7M7MXL9
LinkDB
All DBs
Position
LG2:complement(13360722..13371179)
Genome browser
AA seq
1913 aa
AA seq
DB search
MTSTKSKEIADEYISSLSDLTINSKPLINMLTMLAEDNIEHAPAIVQAVENHLQKVRSEI
KLPVLYLIDSIVKNVNGAYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPAK
KLFSLDVRVQSIDPAWPITASPTSVSSGSIHVNPRFFSMPQQSATSIVSQPIVAPVKLPP
GDPVTPTEAAMREQLLKKQRELIELQKKKIELELLQAKANLEQQQRQLDKQAGNLKAELV
TVTTHITSSTETITQGKLVATTVPSQAPKQVAKQFPAATASLLKNAGINNGPRIAPASSI
AVASAKPVSRDPRLKTTSVQDISVSSVDPRQRISTPTQKDSRGEAQAQLAANTNTVLSDQ
LKQQILSKQAVTSTINKSPTNLAGSDTATLNASNNNNANTNLNNNNNNKNFSGNANKDAV
SHRTSQKKDPRLSSNSSGNLNSNSSKGSQNLSVGSNSSLSVGNRGGGSNDSKSKDSKISN
SRSSSSSTIDKSSASSKSSHRKVGNKSRSKQPQTSPSKIPKVDRDASPVRSKSREKDSGD
SSPSSRTSPQSFQTCKNRKKNTKSRKRSPSPPYRIPRRNDAKSNSVLNNSGGVTEEEQSG
SLIVSPPHPPTFKEIRPNARQRNYVRRNKDGSLSPERSPANAGNVQTAVEPTVESSSKDE
DLRATLPLPGAATSVLEKKEDLDLRVLPPPVNTNKRQTSEHMESALAKKTKAEKFDALFG
NEDVDLRTLTHPKAGRPPTPPPPVISGEDGKDSWAKLKTPSKNDREKQANNNDDKRDNRD
RNRDRLGRLRLYNKLPDDPKERRRTLSNEDQDNRSGRRGRENDKPEKNEDRNIEIIMKQA
AEQLNQGTITKTQYNTLIQEVLHMSEDRKLRAAQRKEKEVGSIVWEKGVNLDITGSSDRT
STFSPSADKEMIRNKDHPIARNPNGPRWQTQPWQQPGPWAHPPGPPYGGPQGHFNSDFRP
VGPWQNPRHFGPMRPDYQYHGGFNHTMGPNPRLGPGMMGPIGPNGPLMSNLLPNGPIGPM
GNPPMSLSGMNGPGMIMNNGPMTNLISNPNMSLNASRNVSPSSSSKYDLEDSDQNYTTTM
IKNPNPHSRELPPPDPKLLDEIARDTMKSIDIDIQHIPREIRYYGQTGVVFMNWDDPREI
GFQDGIRRVLIDDKITITCAFNDQYKEFIYEGEVHRIKLGAPTRELYIDDKWYECYFGGM
PVTVDLGGKKVSVKLEGPPPLVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIFEI
EGKPHTLEFIDSLQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRPGYVKIA
GMKGEEPIEAPPTPPLLTQKPKVDTASTPTQFSAVEHESTSQDGSDLRSTPKPDLQLDML
SSALPSAMAPSSGLSYQAEPAENPPAAAPPLSLPLNMNELFQRLVETGIVSNLSEQKKQE
EEEKKEPEIIPVSFDKPETLKVKQPAIAAALYSGMQCSSCGARFAPELATRYSHHLDWHF
RQNRRERDSARKAHSRPWYYDVSDWIQFEEIEDLEDRVQSWFETEKQTADTEGITAEDSP
QEAAQPSVPTGTDEDSRCQVCHDAFEQFYNEEKEEWHLRPAINFEGKNYHPLCLDDYKIS
RNKSHTCYITGYMYSRALEKSALALEETIEEMEDEKKESSDETFIEDNKTDELSVEALNT
EFEIIEPSNDVIEDNIEEEPVERDNKEEETIIEDNIDCIEQNEKIEEQELEYNNKEDLDI
ESIEKENIETEIPETENVDKSFKNIKIKEEPIDEPEEQLEEEQFDFTNVEVKEEPIEPEP
DPEESIITEPATVDTTYAAVKSSIDGNVELDSTPAAIPTAPSRIKINITKPLCINKEPEE
SKEKEKSIIETSTEEIIEPLVPASIKPALQGRKLSNLPPVERGQELSGLCSIM
NT seq
5742 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaacaaaatctaaggaaatagcagatgagtacatctcatcattgtctgatttg
acgatcaacagtaaaccattaattaatatgcttacgatgctggctgaagataatatagaa
catgcaccagctattgttcaagctgttgaaaatcatttgcaaaaggtgagaagcgagatc
aaattacctgttctttatttgattgattcaattgtgaagaatgttaatggagcatatttg
aatctcttcactcaaaatattgtaaacactttttgcggagtatttgaaaaggtggatgaa
aatacaagagctagcatgtggaaattaaggcaaacctggaatgatgtatttccagcaaag
aaattattttctttagatgtacgagtgcaaagtattgatcctgcctggccaatcactgcc
tctcccactagtgtttcttcgggatctattcatgttaatcctcgttttttttcaatgcct
caacaatcagcaacatctattgtctcacaaccaattgtagcacctgttaagcttccacca
ggtgatccagtaacacctacagaagcagcaatgcgagaacaattattaaaaaaacaacga
gaactgatagaattgcaaaagaaaaaaattgaattagaattacttcaagctaaagctaat
ttagaacaacaacaacgacaacttgataaacaagctgggaatttaaaagctgaattggtg
acagttacaacacatattacgtcaagcacagaaactatcacacaagggaaacttgttgca
actactgtgccaagccaagcacccaaacaagtagctaaacagtttccagcagcaacagct
tcgcttctaaaaaatgcaggaataaataatggcccacgaattgcaccagctagtagtata
gcagtggcatcagctaaacctgtatctcgtgatccaagattaaagactacctcggttcaa
gatatatcagtttcaagtgtggatcctcgtcagcgaataagtacaccaactcaaaaggat
tcgcggggtgaagcccaagcgcagttagcagcaaatacaaacactgtactttcagatcaa
ttaaaacagcagatactttcgaaacaggctgtgactagcactatcaacaagtctccgaca
aatcttgccggctccgatactgcgacattaaacgctagtaataacaataatgctaatacg
aacctcaacaataataataataataaaaatttcagtggtaacgcaaataaagatgctgtg
tcgcatcgaacaagtcaaaagaaagaccctcgattgtctagtaatagtagtggtaaccta
aacagtaatagttccaaaggttctcaaaatctatctgtgggtagtaatagttctttatcc
gtgggtaatagaggaggtgggagtaacgattctaagtcgaaagattcaaagatttcgaat
tctcgaagttcttcgtcatcgacaatcgataaatcttccgcttcctcaaaatcctcgcat
agaaaagtaggtaataaatcgcgatctaaacaacctcaaacatctccgagtaaaataccg
aaagtcgatagagatgccagtcctgttagatccaaatctcgtgaaaaagacagtggagac
agttcaccatcttcgcgtacctctcctcaatcctttcaaacctgtaaaaatcgaaaaaag
aatacaaaatcgagaaagcgcagtccaagccctccatatagaattcccaggcgtaacgat
gcaaaatccaattcagttctaaataattctggtggtgttactgaggaggagcaatctggt
tcattgatagtctctcctcctcatccacctacatttaaagaaatcagaccaaatgctaga
caaagaaattacgtaaggcgtaataaggatggcagtcttagtcccgaacgctctccagca
aatgctggaaacgttcaaactgctgtggaaccaactgtggaatcatccagcaaggatgaa
gatttgagagcaactctacctcttccaggtgcagccacttcggtattagaaaagaaagag
gacttagatttacgtgtattaccaccaccagttaataccaacaaaagacaaacttcagaa
cacatggaatctgctttagcaaagaaaacaaaagctgaaaaatttgatgcattatttgga
aatgaagatgttgatttacgaacattgactcatcctaaagctggacggccacctacacca
cctccacctgtaatatctggtgaagatggtaaagatagttgggcaaaattaaaaacacca
tcaaagaatgatagagaaaaacaagctaataataatgatgataagcgggataacagagat
cgtaacagagatagattgggtagactcaggctttataacaaacttccagatgatcctaaa
gaaagaaggagaacattatcaaatgaagatcaagataatagatcaggtcgacggggtcga
gaaaatgataaacctgaaaaaaatgaggatagaaatattgaaataataatgaaacaagct
gctgagcagttaaatcaaggtactattactaaaactcaatataatactcttattcaagaa
gttttacatatgagtgaagatcgaaaattaagagctgcacaacggaaagaaaaggaagtt
ggttctattgtatgggaaaaaggtgtaaatttagatataacaggttcatcagatcgtaca
tctacattcagtccttctgctgataaagaaatgattagaaataaagatcatcctattgca
agaaatccaaatggtcctagatggcaaactcaaccttggcaacaaccaggaccatgggct
catccaccaggacctccatatggtggtccacaaggacattttaattcagattttagacca
gttggtccatggcagaatccaagacatttcggtccaatgcgaccagattaccaatatcat
ggaggttttaatcatactatgggtccaaatcctcgtttaggacctggaatgatgggacct
ataggaccgaatgggccgcttatgtcaaatttattacctaatggcccgatcggacctatg
ggtaatccacctatgtcattatctggaatgaatggacctggaatgataatgaataatgga
ccaatgacgaatcttatatcaaatccaaatatgtctttgaatgcttcaagaaatgtatca
ccaagttcatcttcaaaatatgaccttgaagatagtgatcaaaattataccacgacaatg
ataaagaatccaaatcctcatagtcgtgaattaccaccaccagatccaaaattattggat
gaaattgcaagagatactatgaaatctatagatatagatatacaacatataccacgtgaa
attagatattatggtcaaactggagttgtttttatgaattgggacgatccaagagaaatc
ggatttcaagacggtatacgacgagttttaattgacgataaaatcactataacttgcgca
tttaatgatcaatacaaagaatttatttatgaaggtgaagttcatcgaattaagttgggt
gcgccgacacgagaattatatattgatgataaatggtatgaatgttatttcggtggtatg
cctgtaacagtagatcttggtggtaaaaaggttagtgtcaaattggaaggacctccaccc
cttgttaagattggtactgtaaagagaacagacttagtagttgccaaaattaatcttatt
attaatgctcgtaatatggttcctgtatttttagatgcaaaacctcaaatatttgaaatt
gaaggaaaacctcatacgcttgaatttatagattcattacaaacagtccttttaaatgga
cgaccatttaaagtagaatttggaggattacctaagcctattatagtcagagataaaaaa
cattttataagattttcggtattacctagaggtgtccgaccaggatatgttaagattgca
ggtatgaaaggtgaagaacctattgaagcaccacctaccccacctttattgacacaaaaa
ccgaaagtggatacagcttctacaccaacgcaattctccgccgttgaacatgaatcaaca
tcacaagatggttcagatcttagatctactcctaaaccggatttacaattagatatgtta
tcttctgctttgccttctgcaatggcaccatcatctggattatcatatcaagctgaacca
gcagaaaatccacctgcagctgctccaccattatcattgccattgaatatgaatgaattg
ttccagagattagttgaaactggtattgtatcaaatctctctgaacaaaaaaaacaagaa
gaggaagaaaagaaagaaccagaaattattccagtttcatttgataaaccagagacactt
aaagttaaacaaccagctattgcagcagcactatacagtggtatgcaatgtagttcttgt
ggtgctagatttgcaccggaattggcaactcgatatagtcatcatttagattggcatttt
agacaaaatagacgagaaagagattctgcaaggaaagctcattcacgaccttggtattac
gatgtaagcgactggatacagtttgaagaaattgaagatttagaagatagagtacaaagt
tggtttgaaactgaaaaacaaacagctgatacagaaggtattactgcagaggattctcct
caagaagctgcacaacctagtgttcctactggaactgatgaagattccagatgtcaagtg
tgtcatgatgcatttgaacaattttataatgaagaaaaggaagaatggcatttaagacca
gcaattaattttgaaggaaagaattatcatccattgtgtctcgatgattacaagataagt
aggaataaaagtcatacatgttacatcactggttatatgtattcgagagctttggaaaaa
tctgcattagcgcttgaagaaacaattgaagaaatggaagatgaaaaaaaggagagctct
gatgaaacgtttatagaggataataagactgatgaattaagtgtggaagcattaaatact
gaatttgaaataatagaaccgtcgaatgatgtaatagaagataatatagaagaagaacct
gttgaaagagataataaagaggaggaaactataattgaagataatatagattgtattgaa
caaaatgaaaaaatagaagaacaagaattagagtacaataataaagaagaccttgatata
gaaagtatagaaaaagaaaatattgaaacagaaataccagaaacggaaaatgtggataaa
tcttttaaaaatattaaaattaaagaggaaccaattgatgaacctgaggaacaattagaa
gaagaacaatttgattttactaatgtagaagttaaagaagaacctattgaaccagaacca
gatcccgaagaaagtataataaccgaacctgcaacagttgacacaacatatgctgctgtg
aagagctctatagacggaaatgtagaattggattctacacctgcagcaattccgacagca
ccatctcgaattaaaattaatattacgaaaccattatgtattaataaagaacctgaagaa
tcaaaggaaaaagaaaaatctataattgaaacatctactgaagaaataatagaacctttg
gtgcctgcttctattaaacctgctttacaaggtagaaaactttcaaatttacctcctgtg
gaaagagggcaagagttatcaggactctgctcaattatgtaa
DBGET
integrated database retrieval system
