Apis mellifera (honey bee): 409839
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Entry
409839 CDS
T01057
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ame
Apis mellifera (honey bee)
Pathway
ame03013
Nucleocytoplasmic transport
ame03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ame00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
409839
03015 mRNA surveillance pathway
409839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ame03019
]
409839
Enzymes [BR:
ame01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
409839
5.6.2.5 RNA 5'-3' helicase
409839
Messenger RNA biogenesis [BR:
ame03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
409839
mRNA cycle factors
Common to processing body (P body) and stress granule
409839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
ATPase
NPHP3_N
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA_7
AAA
AAA_5
AAA_32
Motif
Other DBs
NCBI-GeneID:
409839
NCBI-ProteinID:
XP_006566741
BEEBASE:
GB44890
UniProt:
A0A7M7R480
LinkDB
All DBs
Position
LG11:complement(15013530..15020286)
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AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDAAQSQPNQ
PVQVNGTSGSSSLELKISGAAQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGTSLSK
NKQGPRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgatgcatatggacctagcagtcagacccttacattcctcgacacagaggaa
gctgatttaatcggtgcagacacgcagggtagcgaatttgatttcaccgattttacatta
ccctcaccgagtcaaactcaagcttcgcaacacgatgctgcccaaagtcaacctaaccag
cctgtacaggttaatggaacaagtggcagttcatctttagagttgaaaatttctggagca
gcacaaagtcttgcagaattacaatttgaagaagaagaagaagaagcatactacaatcgt
gatttaccagaacatgcatgtaaatattgtggtattcatgaagcatcttgtgttgttatg
tgtaatgtctgccgcaaatggttttgtaatggacgtggaaatacatctggttctcatatt
attaaccatcttgttcgagccaaacataaggaagttactttacacagagatggccctttg
ggagaaactgttttggaatgttattcatgtgctgttaggaatgtttttgttcttggtttt
attcctgctaaagcagattctgttgttgtattactatgccgccaaccatgtgcagctcaa
agttccttaaaggatatgaattgggatcaagaacaatggaaaccattgattgaagatcgt
tcttttttagcttggttagtaaaaatcccatcagaacaggaacaattacgtgccagacaa
atttctgctcaacaaatcaataagttggaagaattatggcgagataatgtcgatgcgact
ttccaagatcttgaaaaacctggagtagatgaagaaccgcaacaagtacttctgcgatat
gaagatggatatcaatatcaaaatatttttggtccactcgtaaaattagaagccgattat
gataaacgtttaaaagaatctcaaactcaagaaaatatcgaagtacgttgggatgttgga
ctaaataaaaagacaatcgcctatttcatgttagccaaaacagacggtgatatgaagtta
atgcatggagatgaactgagacttcgctatttgggtgaacttcataaaccttggtctgga
attggacacgtgattaaaattcctgataattatggagaagaagtcggtatcgaattaaaa
aataattctggcgctccgacggaatgtgttagtaatttcgtcgttgattttatttggaaa
agtacaagttttgatcgcatgcaattagcattgcgaaaatttgctgtggatgatacttct
gtatccggttacatatatcacagattattaggacatgaagtggaagaagttctatttcgc
tgccatcttcctaaacattttagtgctccaaatttgccagatttaaatcgttctcaagta
tatgctgtaaaacatgctgtacagagacctttatctttgattcaaggaccacctggaaca
ggaaaaactgtaactagcgctacgatagtttatcaacttgtaaaacaaaacggtggtcct
gttttggtatgtgccccttcaaatacagctgtggatcaactcacagaaaaaatacataaa
tctaatttaaaagttgtacgactctgtgcaaaatcacgagaagcaatcgattcgccagtc
agctttcttgctcttcataatcaaatcaaaaatatggagacaaataccgaattgcaaaaa
ttgcagcaattaaaagatgaaaccggagaattatctagcgttgatgaaaaacgttacaga
ttattaaaaaaagcagcagaaaaagaattattggaagcagctgatgtaatttgctgtacc
tgtgttggagctggtgatcctaggttacacaggctcaagtttcattcgattcttattgat
gagagtatgcaagcaactgaacctgaatgtatggtgccagttgttcttggagcaaaacaa
ttaattctcgttggtgatcattgtcaattaggaccagtagttatgtgcaaaaaagctgca
agagcaggtttatcacaatctcttttcgaaagactagttgtacttggaattagacctttc
agattggaagtacaatatcgtatgcatccagatctttctcgatttccatcaaattttttc
tatgaaggttctttgcaaaatggtgtatgtgcagatgagagaaaattgttgaaaattgat
tttccttggcctgcacctgacaaacctatgtttttttatgttactcaaggtcaagaagaa
atagctggaagtggtacatcgtatttgaatcgaacggaagcatctaatgttgaaaaaata
gcaactagatttttacgttgtggtgtaaagcctgaacaaattggagtaataactccatat
gaaggtcaacgagcctatttagttcaatacatgcaatatcaaggatccttgcactcgaaa
ctttatcaggagatcgaggttgccagtgtagatgcatttcagggtagagaaaaagatata
ataattatgtcttgtgtccgatcgaatgaacatcaaggtattggatttctgaatgaccca
cgaaggttaaacgtagctttaacccgagcgaagtatggaatcataattgtaggaaatcca
aaagtattatcaaagcaaccattatggaatcatttattgagtttttataaagaacaaaaa
gttctagtagaaggacctttaaataatcttaaagaatctatgattcaatttgctaaacca
aagaaacttgttaatgctgctaatccaggttctcatttcatgtctacgtcaatgtatgac
gcaagagaagctcttattccaggttccgtgtacgatcgatcaggtactcaggttaatgga
acgcaaaatcataatccttattatcaaagaaacgtacctttagatatattcagtaggacc
catgacaccataagctatattagtccagagagggctcaagcagcgatgaataatgtacca
gttccagtgggaatgtttatgaatatggcacatgtacctccgcgattttataatcaacat
caacaggcattacaggctagacaaaatcaacgtaatcgtcgaggaacatctttatcgaaa
aataaacagggtccacgaatgggcaaactaagtcaaacggaacaaaatactcaaccatat
agtcagccaggtttaccattaactcaaggtacgacacagggaatgtcacaaccaggtttc
agtctttctcagcccggccttagtcaagcagagctttctcaggattcatttgctgtcgga
gaatttcaatcgcaaatggatggtttattatctcaagactcaacttatcaaggtgatcga
agtggtttttatcaatctggacagtcacaagctgggggacaattctcccagccatattga
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integrated database retrieval system
