Aeromonas media: B224_1005
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Entry
B224_1005 CDS
T03075
Name
(GenBank) RecJ single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
amed
Aeromonas media
Pathway
amed03410
Base excision repair
amed03430
Mismatch repair
amed03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B224_1005
03430 Mismatch repair
B224_1005
03440 Homologous recombination
B224_1005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amed03400
]
B224_1005
DNA repair and recombination proteins [BR:
amed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
B224_1005
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
B224_1005
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B224_1005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
bHLH_IRO3
Motif
Other DBs
NCBI-ProteinID:
AHX59991
LinkDB
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Position
complement(752526..754256)
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AA seq
576 aa
AA seq
DB search
MPLQIRRRPRVDDAHLPDTLHPLLRQIFASRGVEDPALLERSASQLLPPQRLFGMEQAVP
LLADALTAQQRILIVGDFDCDGATSSALCVLALRAMGGHHIDFLVPNRFEFGYGLTPEIV
ELAVARGAEFLITVDNGISSIAGVAAAKAAGMRVLVTDHHLPGQELPDADAIVNPNQHGC
DFPSKSLAGVGVAFYLMAALNTHLRQSGWYERQGIRAPNVADYLDLVALGTVADVVALDG
NNRILVHQGLQRIRAGRCRPGIQALVDVSGRDGRRLCAADLGFALGPRLNAVGRLDDMSL
GVACLLSDDLNLARQLASEMDSLNQERKEIEQGMQQEALATLEQIRFRDGEVPSGIVLHR
DEWHQGVVGLVASKVKEKYYRPVIAFAESSDTELKGSGRSIPGVHLRDALELLDTRHPGL
MGKFGGHAMAAGLTLPKANIEAFGRAFETVISELVTPELLTGVLLTDGELLPDELTLELA
ELIRASGPWGQAFPEPLFDGEFVLVQQRLVGEKHLKMMLTTDSGHAVDAIAFGVDLKRWP
DASVKRVRLVYRLDVNEWRGNRSVQLLVEHLEAAGL
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgcccctgcaaatccgtcgtcgtccccgagtggatgacgctcacctgccagataccctg
caccccctgcttcgccaaatcttcgccagccgtggggtggaggatcccgccctgcttgag
cgcagcgccagtcagctgctgccgccccagcgcctgttcggcatggagcaggcggtgccc
ctgctggcggatgccctgacggcgcagcagcgcatcctcatcgtcggcgacttcgactgc
gacggcgccaccagctcggccctgtgcgtgttggccctgcgggccatggggggtcatcac
atcgattttctggtgcccaaccgcttcgagttcggctatggcctcaccccggagatcgtc
gagttggcggtggcccgcggcgccgagttcctcatcacggtggacaacggcatctccagc
attgccggggtggcggcggccaaggcggccgggatgcgggtactggttaccgatcaccac
ttgccaggccaggagctgcctgatgccgatgcgatagtgaaccccaaccagcatggttgc
gacttcccttccaagtccctggccggggtgggggtggccttctatctgatggcggccctc
aatacccatctgcgccagagcggctggtacgagcgccagggcattcgcgcccccaatgtg
gcggattatctggatctggtggcacttggcaccgtggccgacgtggtagcgctggatggc
aacaaccgcatcctggtgcatcaggggctgcagcggatccgggccggtcgctgccgtccc
ggcatccaggcgctggtggacgtatcgggccgcgacggtcgccggctgtgtgccgccgat
ctcggttttgcactggggcctcgcctcaacgcggtgggccggctcgatgacatgtcgctc
ggggtcgcctgcctgctcagcgatgacctcaatctggcgcgccagctcgcttctgaaatg
gacagcctcaaccaggagcgcaaggagatcgagcaggggatgcagcaggaggccctcgcc
accctggaacagatccgttttcgcgatggtgaagtcccctccggcatcgtgctgcaccgg
gacgagtggcatcagggggtagtggggctggtggcctccaaggtgaaggagaagtactac
agacccgtgattgcctttgccgagagcagcgacaccgagctcaagggttcgggtcgctcc
attcccggggtacacctgcgcgatgccctcgagttgctcgacacccgccatccgggcctg
atgggcaagtttggcggccacgccatggcggcggggctgaccctgcccaaggccaatatc
gaggccttcggccgggccttcgagacggtcatcagcgagctggtgaccccggagctgctg
accggggtgctgctcaccgatggcgagctgctgcccgatgaactgactctggagttggcg
gagcttattcgcgcctccggcccctggggccaggccttccccgagccgctgttcgacggc
gagttcgtgctggtgcagcagcgactggtgggggagaagcacctcaagatgatgctgacc
acggattcgggtcatgcggtggatgccatcgccttcggggtggatctcaagcgctggcca
gatgcctcggtgaagcgggtgcggctggtctaccggctcgacgtcaacgagtggcgcggc
aaccgcagcgtccagctgctggtggagcatctggaagccgctggtctctga
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