Aeromonas media: B224_2245
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Entry
B224_2245 CDS
T03075
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
amed
Aeromonas media
Brite
KEGG Orthology (KO) [BR:
amed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amed03019
]
B224_2245
Enzymes [BR:
amed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B224_2245
Messenger RNA biogenesis [BR:
amed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B224_2245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
AAA_30
ResIII
PhoH
AAA_23
HA2_N
NACHT
T2SSE
AAA_11
TsaE
SLFN-g3_helicase
NTPase_1
ABC_tran
AAA_25
SRP54
Motif
Other DBs
NCBI-ProteinID:
AHX60890
LinkDB
All DBs
Position
1760169..1764095
Genome browser
AA seq
1308 aa
AA seq
DB search
MSLSIEALRRRLSACMNLDARRLSSRLHGVKKLPEAKQAAVLETIAADLDVAEARYQSRL
AGVPKVTYPGNLPVSQKQAEIARAISEHQVVIIAGETGSGKTTQIPKICLSLGRGVKGYI
GHTQPRRLAARTVAARIAEEMESELGHYVGYKVRFTDQVSEQTHIKLMTDGILLAEIQHD
RMLTQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPQRFSRHFNQAP
VIEVSGRTYPVEVRYRPLFADKKSGDKSVDKSEALEERDELQGIFDAVEELAQEGLGDIL
IFMNGEREIRDTADALRKLNLRDTEVLPLYARLSNAEQNKVFQQHAGRRIVLATNVAETS
LTVPGIRYVIDPGTARISRYSWRTKVQRLPIEPVSQASANQRKGRCGRVADGICIRLYSV
EDFNNRPAFTDPEILRTNLASVILQMLALGLGNMEAFPFVEPPESRHIKDGLTLLKELEA
VKELPGTRDQEPKLQLTETGRQLSRIPLDPRLAKMVITAAQTGCLSEVMVITAGLSIQDP
RERPMEKKQAADEQHRRFEDKDSDFLAFVNLWNYLKEQQDLLGSNPFRRMCQKEFLSYLR
VREWQDIHFQLRQTVKELGFKANHEPADFKTVHCALLTGLLSHIGNKDLEKPEFLGARNG
RFHLFPASGLFKKPPKWVMAAELVETSRLYARINAKIEPEWVEPLAGHLIKLHHSDPHWS
KKNGAVMAKEKVTLYGLTLVNERTINFSRLDPALCRELFIRRALVEGDFETRHRFFSDNR
KLLAEVEALEHKSRRRDILVDDEDLFRFYDARLPEGVISARHFDKWWKEAQKQDPELLNF
EKEMLMKGDAAHISDLDYPNFWQQGRLKLKLSYQFEPGEAADGVTLHIPLPLLNQVEVKR
FEWLIPGLRHELLVALIKSMPKPMRKNFVPAPNYADALLATLNPEQGPLLDEMERQLRRM
TGVTVPRESWDWNAVPDHLKLTFRVVDDKHKKVAEGKDLEALKESLRGKVQETLSQVADD
DIEQSGLTLWSFGELPQEYSQKRGGFEVKAYPALVDEKDSVSIQLVESPVAQQQLMWAGQ
RRLVLLNVPSPIKYLQEKLPNKAKLGLYFNPFGKVAELIDDCIACGCDKLIEQHGGLAWD
EAGFETLKEYVRAELNDAVVEVAKQVEAVLTLSHEIKKRLKGKMQLDTAFAMSDIQLQLS
NLIHKGFVTETGWQRLPDLLRYLRAIERRLEKLAIDPNRDRVHMLKVQSVESDYKALLAK
IPKSQPIPPEVANIRWMIEELRVSFFAQQLGTPYPISDKRVQSAIAQC
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
ttgtctctctctatcgaggcgctgcgccgccgtctctctgcctgcatgaatctcgatgcc
cgccgtctttccagccgtctgcacggggtcaagaagctgcccgaggccaaacaggccgcc
gtgctggagaccatagccgccgatctggatgtcgccgaggcgcgctaccagtcccgtctg
gcgggcgtgcctaaggtgacctatccaggcaatttaccggtcagccagaagcaggcggag
atcgcccgcgccatcagcgagcatcaggtggtgatcatcgccggtgaaaccggctcgggc
aagaccacccagatccccaagatttgtctctcgctggggcgcggggtcaagggctatatc
ggccacacccagccgcggcgtctggcggcccgcaccgtggcggcccgtattgccgaagag
atggagtccgaacttgggcattacgtgggttacaaggtgcgctttaccgatcaggtgagc
gagcagacccacatcaagctgatgaccgacggtatcctgttggcagagatccagcacgac
cgcatgctcacccagtacgacaccatcatcatcgatgaggcccacgaacgcagcctcaac
atcgacttcattctgggctatctgaagcagttgctgccaaagcgccccgatctcaaggtg
atcatcacctcggccaccatcgacccgcagcgcttctctcgtcatttcaaccaggcgccg
gtgatcgaggtctccggccgcacttatccggtagaggtgcgctatcgcccgctgtttgct
gataaaaagagcggtgacaagagcgtagacaagagtgaggcgctggaggagcgcgacgag
ctgcagggcatcttcgatgcggtggaggagctggcccaagaggggctgggggacatcctt
atcttcatgaacggcgagcgggagatccgcgacaccgccgatgccctgcgcaaactcaat
ctgcgcgacaccgaggtgctgccgctctatgcccgcctctccaacgccgagcagaacaag
gtgttccagcaacacgccgggcggcgcatcgtgctcgccaccaacgtggcggagacctcg
ctgacggtgccgggcattcgttacgtcatcgatccgggtaccgctcgcatcagtcgctac
tcctggcgcaccaaggtgcagcgcctgcccatcgagccggtttcccaggccagcgccaac
cagcgtaaagggcgttgcggccgggtggcggacggtatctgtattcgcctctactcggtg
gaggatttcaacaaccgtccggcctttaccgaccccgagatcctgcgcaccaacctggcc
tccgtcatcttgcagatgctggcactcggccttggcaacatggaggccttccccttcgtc
gagccaccggagtcgcgccatatcaaggatggcctgaccctcctgaaagagctggaggcg
gtcaaagagctgcccggcacccgggatcaggagccgaaactgcagttgaccgaaaccggt
cgccagctctcgcgcatcccccttgatccacggcttgccaagatggtgatcacggcggcg
caaaccggctgtctgagcgaggtgatggtgatcaccgcgggcctcagtattcaagatccc
cgcgagcggcccatggagaagaagcaggccgccgacgagcaacacagacgctttgaagac
aaggattccgacttcctcgccttcgttaacctctggaactacctgaaagagcagcaggat
ctccttggcagcaacccgttccgccgcatgtgccagaaggagtttctctcctacctgcgg
gtgcgcgagtggcaggacattcatttccagctgcgccagacggtcaaagaactgggcttc
aaggccaaccatgaaccggcggatttcaagacggtgcattgcgcgctgctgaccggcctc
ttgagccacatcggcaacaaggatctggaaaagcccgagttcctcggcgcccgcaatggc
cgcttccacctgttcccggcatcgggcctgttcaagaagccgcccaagtgggtgatggcc
gctgaattggtggagacctcgcgcctctacgctcgcatcaacgccaagattgaacccgag
tgggtggagccgctggcaggccacctcatcaagctgcaccacagcgacccccactggtcg
aagaaaaatggcgccgtgatggccaaggagaaggtgacgctttatggcctgacgctggtc
aatgagcgcaccatcaacttcagccgcctcgatccggccctatgccgcgagctgtttatt
cgccgcgcgctggtggagggggatttcgagacccgtcaccgtttcttcagcgataaccgc
aagctgttggccgaggtggaagcgctggagcacaaatcccggcggcgcgacattctggtg
gatgacgaggacttgttccgcttctacgatgcccgtttgccggagggggtgatctccgcc
cgccatttcgacaagtggtggaaagaggcgcaaaagcaggatcccgagctactcaacttc
gaaaaagagatgctgatgaagggggatgcggcccatatcagcgatctcgactaccccaac
ttctggcagcaggggcgcctcaaactcaaattgagctaccagtttgaaccgggggaggcg
gcggacggcgtgaccttgcatattccgctgccgctgctcaatcaggtggaggtgaagagg
ttcgagtggttgatcccggggcttcgtcatgagctcttggtggcccttatcaagtcgatg
ccaaagccgatgcgcaagaacttcgtgccagcgccgaactacgccgacgcgctgctcgca
accctcaatcccgagcaggggccgctactggacgagatggagcgtcagttgcgccgcatg
accggtgtcactgtacctcgcgaatcctgggactggaatgcggtgcccgatcacctgaaa
ctcaccttccgggtggtggacgacaagcacaagaaggtggcggaaggcaaagacctggag
gcattgaaagagtcgctgcgcggcaaggtgcaggagaccctctcccaggtggctgacgac
gatatcgagcagtccggcctcaccctgtggagctttggcgagttaccgcaggagtacagc
cagaagcgcggtggttttgaagtgaaagcctatccggcgctggtggatgagaaagattcg
gtctccatccagttggtagagagcccggtggcccagcaacagctgatgtgggccggccag
cgccgactggtactgctcaatgtgccatctcccattaaatacctgcaggagaagttgccc
aacaaggccaagctggggctctatttcaacccctttggcaaggtggccgaattgattgac
gattgtatcgcctgtggctgcgacaagctgatcgagcagcatggcgggttggcctgggac
gaagccggtttcgagacgctcaaggagtacgttcgcgccgagctcaacgatgcggtggtg
gaggtggccaagcaggtggaagccgtacttaccctctcccatgagatcaagaagcggctc
aagggcaagatgcagctcgacactgcctttgccatgtcggatatccagctgcagctgagc
aatttgatccacaagggcttcgtcaccgagaccggttggcagcgactgcctgacttgctg
cgctatctgcgtgccatcgagcgacgtctggagaagctggccatcgatcccaaccgggac
agggtccatatgctcaaggtgcagagcgtggagagcgactacaaggcgctgctcgccaag
atccccaaatcccagccgatcccgccggaggtggccaatatccgctggatgatagaggag
ctgcgggtctccttcttcgcccagcagctggggacgccgtaccccatctcggataaacgg
gtgcagagcgccatagcccagtgctaa
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