Aeromonas media: B224_2278
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Entry
B224_2278 CDS
T03075
Name
(GenBank) ribonuclease E and G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amed
Aeromonas media
Pathway
amed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B224_2278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amed03019
]
B224_2278
03009 Ribosome biogenesis [BR:
amed03009
]
B224_2278
Enzymes [BR:
amed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B224_2278
Messenger RNA biogenesis [BR:
amed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B224_2278
Ribosome biogenesis [BR:
amed03009
]
Prokaryotic type
rRNA processing factors
B224_2278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AHX60915
LinkDB
All DBs
Position
complement(1792101..1795283)
Genome browser
AA seq
1060 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPSGYSYQGRPNIKEVVREGQEVIVQIDKEERGTKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSGLTVPDGMGLIVRTAGVGKSPEEL
EWDLNVLLNHWDSIHKASQDRTAPVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERA
KSHIELVRPDFLNRVKLYKGDVALFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLREAVHQDRARIQLGRISRFGLLEMSRQRLRPSLNESSSHICPRCQGQGVIRDNESLAL
SILRLIEEEAMKDNTEQVHGQVPVDVAAYLLNEKRAAIASLEQRNDVRVYIIPNQHLETP
HYEVTRIRQNEIPEAASYELKTEIAKPVYQPKQAQVIEREQPLLQGFVQAPQPAVPVVAP
APVAAPAPVAAEAGLFGKLFKAISGLFGSDTAQVEVKAPAEKPAAQREARKDEGHRHQRD
ETRSRGQRGRRDDNRSNRNPADAGEKREGAANREGGESRNRRPRKEREPRQEREARSEVR
SEQRMEREPRGEVRNEPRMDREPREPREPRQEREPRAPRPAREPRAPREPRAEVVVEAVE
TVETVAVSAEPRQEKEQKVAERRERRQLRKQVRVDVAATDTPVLPVDEQAPDLAETAAVV
GEQEEQTEGQRRSRRTPRSQRIEGQRRKRINEDARGQRDDEPQADVQLTTAAQADAAQVK
VEEPAVPVITIPSAEAVAAALQASSALTEHVVAEAVAEEAHEQAQAAATEVAAPVVAEVV
EAPVAVEAAPAAIEPAPVAIEAAPVAAEPVTEVVVEETQVVVEASVADQAVVEAAPVVVE
PVPAPQAEEAIPAAEPVAPVVAQPEPVVAPATKPVAKGAGVLARARKASAPMATPAAVPA
PAPREPVEQAPLERSEVASSGRHGGSTAAVNVATSPAGRP
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcgactcaggaagaggagttgcgcgtagcgctggttgac
ggacaacagctctacgatttggatattgaaagtccgggacacgagcagaaaaaagcgaac
atttacaagggtaaaatcacccgcgtagaacccagtcttgaagctgcttttgttgactat
ggcgccgagcgccacggtttcctgccgttaaaggaaatcgcccgcaattacttcccctcc
ggttactcctatcagggtcgtcccaacatcaaagaagtggtccgcgaaggccaggaagtg
atcgtccagatcgacaaggaagagcgtggcaccaagggtgcggccctcaccaccttcatc
agtctggccggcagctatctggtgctgatgccgaacaacccccgtgctggcggtatttcc
cgtcgtatagagggtgacgagcggaccgagttgaaagaagccctgagcggactgaccgtg
ccggacggcatgggtctcatcgtgcgtaccgccggtgtcggcaaatccccggaagagctg
gaatgggacttgaacgttctgctcaaccactgggactccatccacaaggcgtcacaggac
cgtaccgcgcccgtgctcatccaccaggagagcaacgtgatcgtgcgtgccattcgtgac
tatctgcgtcgcgatgtcggcgagatcctgattgacaacccggtcatcttcgaacgtgcc
aagtcgcacatcgagctggtacgccccgatttcctcaatcgcgtgaagctgtacaagggt
gatgtcgccctgttcaatcacttccagatcgagagccaaatcgagtctgccttccagcgt
gaagtgcgtttgccctccggcggcagcatcgtcatcgatccgaccgaagcgctgacctcc
atcgatatcaactcctcccgcgccaccaagggcggcgatatcgaagagacggcgctgcag
accaacctggaagcggccgacgaaattgcccgtcaattgcgtctgcgtgacctgggtggc
ctgatcgtcatcgacttcatcgacatgacgccggttcgccatcaacgcgaagtggaaaat
cgtctgcgtgaagcggtccatcaggacagagcccgcatccagctgggccggatctcccgt
ttcggtctgctggaaatgtctcgccagcgtctgcgtccctccctcaacgaatccagcagc
cacatctgcccccgttgccagggtcagggtgtcatccgtgacaacgaatccctcgccctg
tccatcctgcgtctcatcgaagaagaggccatgaaggacaacaccgagcaggttcacggc
caagtgccggtcgatgtcgccgcctatctgctcaacgagaaacgcgccgccatcgccagc
ctggaacagcgcaatgatgttcgtgtttacatcattccgaaccagcatctggaaaccccg
cactacgaagtgacccgcatccgtcagaacgagatcccggaagcggccagctacgagctg
aaaaccgagattgccaagccggtctaccagcccaagcaggctcaggtcattgagcgcgag
cagccgctgctgcaaggcttcgtccaggcacctcaaccggccgtccctgttgtcgcccct
gcccccgtcgcagcaccggcaccggtcgccgccgaagcgggtctgtttggcaagttgttc
aaggccatctccggtctgttcggctccgacaccgcccaggttgaggtgaaagcacccgcc
gagaaaccggctgcccaacgggaagcgcgcaaggatgagggtcaccgtcatcagcgtgac
gaaacccgcagccgtggccagcgtggtcgtcgcgatgacaaccgcagcaaccgcaacccg
gccgacgctggcgagaagcgtgaaggcgcggccaaccgcgagggtggcgagagccgcaac
cgtcgtccgcgtaaagagcgcgagccccgtcaggagcgtgaagcccgtagtgaagtgcgt
agcgaacagcgcatggaacgtgaaccccgtggcgaagtgcgcaacgaaccgcgtatggat
cgcgaaccccgcgaaccccgtgagccccgtcaggaacgtgaaccccgcgccccgcgcccg
gctcgcgaaccccgtgcaccgcgcgagccccgcgccgaggtcgtggttgaagcggtagaa
acagtcgagactgtcgccgtcagcgccgagccgcgtcaggaaaaagagcagaaagtggcc
gagcgtcgcgaacgtcgccagctgcgcaagcaggttcgggtcgatgtcgccgccaccgac
acccctgtcctgccggtagacgagcaggctcctgatctggccgagactgcggccgtggtc
ggtgagcaagaggagcagaccgaaggtcagcgccgctctcgccgtactccgcgcagccag
cggatcgaaggccagcgtcgcaaacgcatcaacgaagatgcccgtggccagcgtgatgat
gaacctcaggccgacgtgcaactgacgacagccgcccaggcggatgctgctcaggtgaag
gtggaagagcccgccgtgcctgtcatcaccatcccgagtgccgaggccgttgccgccgcg
ctgcaagcctcctccgcactgaccgagcacgtggtcgctgaagccgtggccgaagaggcc
catgagcaggctcaagcggctgcgaccgaagtcgccgcccctgtggtcgccgaggtggtt
gaagcccccgttgcagtcgaagcggctcctgccgccatcgagccggccccggtagcaatc
gaagcagctcctgtcgctgccgaacctgtgaccgaggtggttgtcgaggagactcaggtc
gtggtcgaggccagcgtcgctgaccaggctgtggtagaagccgcccccgttgtggtggag
ccggttcctgccccgcaagccgaggaagcgattcctgccgccgagcctgttgcccctgtg
gttgcacagcccgagcctgtcgtcgccccggccaccaaaccggttgccaaaggcgctggc
gtactggcccgtgcccgcaaggcttctgcccccatggcaacgccggcagccgtgcctgcc
ccggctccccgtgagccggttgagcaggccccgctggagcgtagcgaagtcgcgagctca
ggccgccacggtggcagcacagccgccgtcaatgtagcaaccagcccggccggtcgtccc
tga
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