Aeromonas media: B224_2459
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Entry
B224_2459 CDS
T03075
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
amed
Aeromonas media
Pathway
amed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B224_2459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amed03019
]
B224_2459
Enzymes [BR:
amed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B224_2459
Messenger RNA biogenesis [BR:
amed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B224_2459
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
AAA_19
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AHX61055
LinkDB
All DBs
Position
1945833..1947227
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AA seq
464 aa
AA seq
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MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPML
HRLLANHGRGGRRQVRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLDA
IKLGVDILVATPGRLLDLLTQGALTLSALEVLVLDEADRMLDMGFITDIRRIMNALPEER
QTLLFSATFSNDIKALADDLLNDPTLIEVDPSNTAADQVTQRVIQVDRERRREMLSHMIG
RGNWQRVLVFVRTKQIADRLAQQMQKDGLNTVAIHGDKSQGARNRALADFREGKVRVLVA
TDIAARGLDIDQLPHVINFELPQMAEDYIHRIGRTGRAGRGGEAISLVSQDELGQLKDIE
ALIGQSLTVEIMEGYEPSGKPSRQTLPGSKPVQNPPRARGHANAKSNNAKGKPDAAKGKA
KGDGPKKPAPARKREVVGEDIGFTPMRRLPKAQRDDYQDNSSEE
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcaatgaactgggtctgtcaccgcacatcctgcgggccgtcaaggagctgggt
tacgaacaacccacccccatccagcagcaagccatcccggccattctggccggtcaggac
gtgctgggcggtgcccagacagggacaggcaagacggccggtttcaccctgcccatgttg
caccgtctgctggccaaccacggccgtggtggccgccgtcaggttcgcgccctggtgctg
accccgacccgggagctcgccgcccaagtgggcgagagcatcatcaagtacgcccatcat
ctgccgttccgcaccctgatcgcctacggcggcgtcagcatcaagccgaacctggacgcc
atcaagctcggggtcgacatcctggtcgccaccccgggccgcctgctggatctgctgacc
cagggagcactcaccctgagcgctctggaagtgctggtgctggatgaagcggacagaatg
ctcgacatgggtttcatcaccgacattcgccgcatcatgaatgcgctgccggaagagcgt
cagacgctgctgttctccgccaccttctcaaacgacatcaaggcgctggcggacgatctg
ctcaatgaccccaccctgatcgaggtggatcccagcaacaccgccgccgatcaggtgacc
cagcgcgtcatccaggtcgaccgggaacgccgtcgcgagatgctctcccacatgatcggc
cgtggcaactggcagcgagtgctggtgttcgtgcgaaccaagcagatcgccgaccgcctc
gcccagcagatgcaaaaggatggcctcaatacggtcgccattcacggcgacaagagccag
ggtgcccgcaaccgggcgctggccgatttccgcgagggcaaggtgcgggtgctggtcgcc
accgacatcgccgcacgcggcctggacatcgatcagctgccccatgtgatcaacttcgag
ctgccccagatggcggaggattacatccaccgcatcggccgcaccggccgcgccggccgt
ggtggcgaagccatctccctggtgagccaggacgagctgggccagctcaaggatatcgag
gccctgatcggccaatccctgaccgtggagatcatggaagggtacgagccgagcggcaaa
ccgagccgccagaccctgccaggcagcaagccggtgcaaaacccgccccgtgcccgcggc
catgccaacgccaagagcaacaatgccaagggcaagcctgacgcggccaaaggcaaggcc
aaaggggacggccccaagaagccggccccagctcgcaagcgcgaggtcgtgggggaagac
atcggcttcacccccatgcgccgcctgcccaaggcccagcgcgacgactatcaggacaac
tccagcgaggagtga
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