Aeromonas media: B224_4893
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Entry
B224_4893 CDS
T03075
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
amed
Aeromonas media
Pathway
amed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B224_4893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amed03400
]
B224_4893
DNA repair and recombination proteins [BR:
amed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B224_4893
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B224_4893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
RsgA_GTPase
AAA_23
AAA_25
AAA_21
nSTAND3
DnaJ_CXXCXGXG
Viral_helicase1
NACHT
cobW
BCA_ABC_TP_C
T2SSE
ScfRs
Motif
Other DBs
NCBI-ProteinID:
AHX62791
LinkDB
All DBs
Position
complement(3823987..3826815)
Genome browser
AA seq
942 aa
AA seq
DB search
MEKIVIRGARTHNLKNINLILPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC
PTHAIPLAAQTISQMVDQVLAQPEGTKLMLLAPVVRNRKGEHTKLLENLAAQGYIRARID
GEVCDLSDPPPLELHKKHTIEVVVDRFKVRDDLALRLAESFETALTLSGGIVLVAPMDGE
EGIAPLIFSANFACPECGYSMSELEPRIFSFNNPAGACPTCDGLGVQQYFDPAKLIHDPG
QSLAGGAIRGWDKRSFYYFQMLKSLAEHYKFDLEAPWEDLPAKTQEVILRGSGRTEIEFR
YMNDRGDVVVRKHPFEGILHNMERRYRETESNSVREELAKYIANKSCTSCGGSRLREEAR
HVFVDNRNLPAIAEQSIGDALAFFEGLNLSGQRAQIAEKILKEIVERLGFLVNVGLNYLS
LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLKTLTHLRDLGN
TVIVVEHDEDAIRLADHVLDIGPGAGVHGGAIVAQGTPEEIIANPESLTGDYLSGRKQIA
IPDERTPLTGKWLKLKGASGNNLRNVNLDLPIGVMTCVTGVSGSGKSTLINDTLFRIAHR
ELNKATESTPAPYREVEGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELLSGTQE
ARSRGYLPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVKY
KGKNIHEILEMTVEDARAFFDPVPAVARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL
ARELSKRDTGQTLYILDEPTTGLHFHDIQQLLKVLHQLRDRGNTIVIIEHNLDVIKTADW
IVDLGPEGGAGGGRILVTGTPEEMSRCKESHTARFLAPLLNK
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaatcgtgatccggggtgcccgcacccacaacctcaaaaacatcaatctgatt
ctgccccgcgacaagttgatcgtggtcaccggcctgtccggttccggcaagtcttccctg
gcgttcgataccctctatgccgaaggccagcgccgctatgtggagtcgctctccgcctat
gcccgccagttcctctccctgatggagaaaccggacgtggatcatatcgaggggctctcg
ccagccatctccatcgagcagaagtccacctcccacaacccgcgttcgaccgtcggcacc
atcaccgagatctacgactacctgcgtctgctgtttgcccgggtcggcgagccgcgctgt
ccgacccacgccatcccgctcgccgcccagaccatcagccagatggtggatcaggtgctg
gcccagcccgaaggcaccaagctgatgttgctggcgcccgtggtgcgcaatcgcaagggg
gagcacaccaagctgctggagaacctggcggcccagggctacattcgtgctcgcatcgat
ggggaggtgtgcgatctctccgatcctcccccgctggagctgcacaagaagcacaccatc
gaagtggtggtggatcgcttcaaggtgcgtgatgacctggcgctgcgcctcgcggagtcc
ttcgagacggcactgaccctctccggcggcatcgtgctggtggcgcccatggacggggag
gaggggattgcccccctgatcttctccgccaacttcgcctgccccgagtgcggttactcc
atgtcggagctggagccacgcatcttctccttcaacaacccggccggcgcctgccccacc
tgcgacggtctcggggtgcagcagtacttcgatcccgccaagctgatccacgatccgggc
cagagcctggccggtggcgccatccgcggttgggacaaacgcagcttctattacttccag
atgctgaaatccctcgccgagcactacaagttcgatctggaggcaccctgggaggatctg
ccagccaagacccaggaggtgatcctgcgcggctccggccgcaccgagatcgaattccgc
tacatgaacgatcgcggcgatgtggtggtacgcaagcacccgttcgaggggatattgcac
aacatggagcgccgctaccgggagactgaatccaactcggtgcgggaagagctggccaag
tacatcgccaacaagtcctgcaccagctgcggtggcagccggttgcgggaagaggcgcgc
catgtcttcgtggacaaccgtaatctgccagccatcgccgagcagtccatcggcgatgcg
ctcgccttcttcgaggggttgaacctgagcggccagcgcgcccagatcgccgagaagatc
ctcaaggagatagtcgagcggctcggcttcttggtgaacgtcggcctcaactacctgagc
ctgtctcgcagtgccgagaccctctccggtggcgaggcgcagcggatccggctggcgagc
cagatcggcgccggtctggtgggggtcatgtacgtgctggatgagccctccatcggcctg
caccaacgggacaacgagcggctgctcaagaccctcactcatctgcgcgatctgggcaat
accgtgatcgtggtggagcacgacgaggatgccatccgcctcgccgatcatgtgctcgat
atcggccccggggccggcgtgcacggtggtgccatcgtcgcccaggggacgccggaagag
atcatcgccaaccccgaatcgctgaccggtgactacctctccggtcgcaagcagatcgcc
attccggatgagcgcaccccgctcaccggcaagtggttgaagctcaagggggcgagcggc
aacaacctgcgcaacgtcaacctggatctgcccatcggggtgatgacctgcgtcaccggg
gtctccggctccggcaagtcgaccctgatcaacgacaccctgtttcgcatcgcccaccgg
gaactcaacaaggccaccgagtccacgccggccccctatcgcgaagtggaagggctggag
cacctggacaaggtggtggacatcgaccagagcccgatcggccgcaccccgcgctccaat
cctgccacctataccggcttgttcactccgatccgcgagctgctctccggcactcaggag
gcgcgctcccgcggctacctgccgggtcgcttctccttcaacgtcaaggggggccgctgc
gaggcctgtcagggggatggcgtcatcaaggtggagatgcacttcctgccggatgtctat
gtgccgtgcgacgtctgcaagggcaagcgctacaaccgcgagaccctggaggtgaagtac
aaaggcaagaacatccacgagatcctcgagatgacggtggaagatgcccgcgcgttcttc
gatcccgtccctgcggtggcgcgcaagctgcaaaccctgatggatgtgggcctctcctac
atccgcctcggccagtccgccaccaccctgtcgggtggcgaggcgcagcgggtcaagctg
gcgcgggagctctccaagcgcgacaccggccagactctctacatcctggacgagccgacc
acggggctgcacttccacgacatccagcaactgctcaaagtgctgcaccagctgcgggat
cggggcaacacgatcgtcatcatcgagcacaatctagacgtcatcaaaaccgccgactgg
atcgtcgatctggggccggaagggggcgccggtggtggccgcatcctggtgaccggcacg
ccggaggagatgagccgttgcaaggagtcgcacaccgcgcgcttcctggcccccttgctg
aacaagtaa
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