Aeromonas media: B224_4920
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Entry
B224_4920 CDS
T03075
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
amed
Aeromonas media
Pathway
amed03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
B224_4920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amed03400
]
B224_4920
Enzymes [BR:
amed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
B224_4920
DNA repair and recombination proteins [BR:
amed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
B224_4920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
Helicase_RecD
UvrD-helicase
SH3_13
AAA_22
AAA_16
nSTAND3
CbiA
AAA_28
NTPase_1
SRP54
SLFN-g3_helicase
T2SSE
TraI_hel_assoc_N
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
AHX62811
LinkDB
All DBs
Position
complement(3845278..3847341)
Genome browser
AA seq
687 aa
AA seq
DB search
MSDTMISTATSAIMIERLKALALTGRIRQLDLQFAKLVADLGGSPELVLGAALACFELGR
GHVCLPLEMLAAGSLRPFGLDPQQSRDLLGDLADPARWPALFAASPLVGSEQHDGDVPRW
PLRLWHGRLYLTRYHDHEQGVARHLRALSERAEWPEIAPALSRLFARDYGLVFAALLKAR
LAPDFSARHFIEKYLDLVFPSEVDWPAIEALLASAQAASDLGKLDTLVPEALCCNGQKLA
AATAAARPFAVISGGPGTGKTTTVAKLLAILVETGLQAGKAPAIRLVAPTGKAAARLTES
IGSALQALDLPPEWVEAIPTEAGTLHRLLGVIPGRSQFRHHAGNPLHLDLLVVDEASMVD
LPMMARLLDALPSHARLILLGDKDQLASVEAGAVLGDICSFIEQGISPAQAEWLSRQTGY
RLQGTPVGAPVRDSLCLLAKSWRFDQHSGIGQLARACNSGDAAAVESVWGMGFADISLHP
WAGEAYDALIAQGVAGYGSYLKAARAGEDPAAVFKAFNSFQILCALRDGPFGVLGLNERL
ELALSRAGLIARDGDWYAGRPVMVVRNDHGVGLYNGDMGLCLPDESGRLKVWFEQPDGTL
RALLPSRLPPHETVYAMTIHKSQGSEFAHTVLVLPDSPSPLLTRELVYTGITRAKARLDL
YGDRALLAQAVRKKTERYSGLAERLGI
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaccatgatcagcacggcgaccagcgccatcatgatcgaacggttgaaagca
ctggcgctgacggggcgcatccgccagctggatctgcaatttgccaaactggtggccgat
ctgggcggcagccccgagctggtgctgggggcggcgctcgcctgcttcgagctggggcgc
ggccatgtctgcctgccgcttgaaatgctggcagccggatccctgcggccgttcgggctg
gatccccagcagagccgggatctgctgggggatctggcggatcctgcccgctggcccgcc
ctgtttgcggccagcccgctggttggcagcgagcagcatgacggcgacgtcccgcgctgg
ccactgcggctctggcacgggcggctttacctcacccgctaccacgatcacgagcaggga
gtggcccgccatctgcgtgccctgagtgagcgagccgaatggccggagattgccccggcc
ctgtcgcggctgtttgcccgcgactacgggttggtgttcgcggcgctgctcaaagcccgc
ctcgcccccgacttctcggcccgccactttatcgagaagtatctggatctggtgttcccg
agcgaagtggattggcccgccatagaggcgctgctggccagcgcccaggccgcgagcgat
ctgggcaagctggatacgctggtgcccgaagcgctctgctgcaacggccagaagctggcg
gcagccaccgcggcggcgcgcccctttgcggtgatctccggcggccccggcaccggcaag
accaccacggttgccaagcttttggccattctggtggagaccggcctgcaagcaggcaag
gcgccggcgatccggctggtggcccccaccggcaaggcggcggcgcgtctcaccgagagt
atcggctctgccttgcaggccctcgacttgccccccgagtgggtcgaggcgatccccacc
gaagcgggcactttgcaccggctgctcggggtcattccggggcgcagccagttccgccac
cacgcgggcaacccgctgcacctcgacttgctggtggtggatgaggcctccatggtcgac
ttgccgatgatggcgcgcctgctcgatgcgctgccgagccacgcccgcctgatcctgctc
ggcgacaaggatcagctcgcctcggtggaggcgggggccgtgctcggcgatatctgcagc
tttatcgaacagggcatcagccccgcgcaggcggagtggctctcccgccagaccggctac
cgcttgcagggcacgcccgttggggctccggtgcgcgacagcctctgtttgctggccaag
agctggcgctttgatcagcactccggcatcggtcagctggcgcgcgcctgcaacagcggc
gatgccgcggcggtggaatcagtctggggcatgggctttgccgatatcagcctgcacccc
tgggcgggggaggcctacgatgcccttattgcccaaggggtggccggttacggcagctat
ctgaaggcggcccgcgcgggggaggatcccgccgccgtgttcaaggcattcaacagcttc
cagatcctctgcgccctgcgcgacggccccttcggcgtgctgggtcttaacgagcgactc
gaactggccctgtcacgggctggcctgattgcccgcgatggcgactggtatgccggtcgc
ccggtgatggtggtgcgcaacgaccacggggtcggcctctacaacggcgatatggggctc
tgcctgccggatgaaagcgggcggttgaaggtctggtttgagcagccggacggcaccctg
cgcgccctgttgcccagccgattgcccccccacgagacggtctatgccatgaccatccac
aaatcccagggctcggagtttgcccataccgtgctggtgctgcccgacagccccagcccg
ctgctgacccgcgagctggtctataccggcatcacccgcgccaaggcccggctcgatctc
tacggcgatcgcgccctgctggcccaagcggttcggaaaaaaaccgagcgatattccgga
ttggcggagaggttgggaatataa
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