Aeromonas media: B224_4923
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Entry
B224_4923 CDS
T03075
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
amed
Aeromonas media
Pathway
amed03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
B224_4923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amed03400
]
B224_4923
Enzymes [BR:
amed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
B224_4923
DNA repair and recombination proteins [BR:
amed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
B224_4923
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
AAA_11
Biotin_carb_C
Motif
Other DBs
NCBI-ProteinID:
AHX62812
LinkDB
All DBs
Position
complement(3847338..3850946)
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AA seq
1202 aa
AA seq
DB search
MANPLNTLRFPLHGERLIEASAGTGKTYTIAGLYLRLLLGHGPLIEEGADAGQLSAHERP
LSVTEILVVTFTEAATAELRGRIRGRIHEARLAFMRGESKDDLLAQLLAEVEDHELAARR
LLAAERQMDEAAVFTIHGFCQRMLKQNAFESGALFETEFLTDDSQLRLQAVSDYWRAEFY
PVDKALASSVRALWPSPAALLREMGSWLDNSELEIHPALGDETLAARHQAAMSRIGAVKD
AWLAQGDEIRRQTEGQIKLYTGKNYEGWLAKIGDWAQDPTSGYTLPKDLERFGQETLEAK
LSKGKALPTLPLFTQIDELLASRPDIRDLILQRAARVVRSRMQSSKRQAHQLSFDDLLKD
LDGALGSSLGERLCDRIRATYRVAMIDEFQDTDPQQYRIFHRLYGGHQDTALLMIGDPKQ
AIYGFRGADIFTYIQARRNVSAHYTLGRNWRSSSALVGAVNGLFERAKDPFIYEADIPFL
PVEAQGKSKALLLDGATAPVLHCWQLSGQPTFNRGDYQSKMARATAAEIHRLLTLAREGK
AKIGDQAVKAGDIAVLVRTGAEGKLVQQELARLAIASVYLSNRESVLEQVEAREILLILH
ACQNPSEERSLRAALATGLFDLDAKALDGLASDERAWESAVQEFMEYRKIWHRRGVLAML
RALLHRRNLASSLLASPYGERRLTNFLHLGELLQQVSSELDGEYALLRWLGEAVSRPNGQ
DAEQVLRLESERKLVQIVTIHKSKGLEYPLVFLPFICSHRTAETPLYHEADEAGNRTILD
LTGAEGSLAEADRERLAEDLRLLYVALTRGVYATWLGLAPVRSGNGKSEKTDLHHTAIGY
LLQKGEEGDAQTLATALTELAQALPGVAVGEPSLTRPAPMPPEEEQLGEPQVRHFSGSLE
RDWWISSYSGLAAQGHGHSKGVLANPGFDDEVVTEAASLASEQPEEAPQPSIFTFPKGAR
PGTLLHSLFETIDFQSAAGESLAEHIATLLAQDGFDESWAPVLQQQVEAVLDTPLETGFG
EPVRLRDLAPERKQVELEFFLPMGRVTAQALTALCQQHDPLSRGNKPLSFATVQGMLKGF
IDLVFEWQGRWYLLDYKSNHLGMSPADYSRPALERAMAEHRYDLQYQLYSLALHRLLTLR
LPGYDFEQHFGGVFYLFLRGMPQGGIFHTRPSRELVLGLDELFRNGDRSGGVSSTELNEV
EA
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggctaacccgctcaataccctgcgttttcccctccatggtgaacgactgatcgaagct
tccgccggtaccggcaagacctacaccatcgccggtctctacctgcgcctgctgctgggc
cacggcccgctgattgaggagggcgccgatgccggtcagctgagcgcccacgaacggccg
ctgtcggtgaccgaaattctggtggtgacctttaccgaagcggccaccgccgagctgcgt
gggcggatccgcggtcgcattcacgaggcgcggctcgcctttatgcgcggtgagagcaag
gatgacttgctggcccagttgctggcagaggtggaggatcacgagctggcggcccgccgc
ctgctggctgccgagcggcagatggacgaggcggcggtcttcaccatccacggcttctgc
cagcggatgctcaagcaaaacgccttcgagtcgggcgccctctttgaaaccgaatttctc
actgacgacagccagctcaggctacaggcggtgagcgactactggcgcgccgagttctat
ccggtggataaagccctcgccagctcggtgcgcgcactctggccgagccccgccgccctg
ctgcgggagatgggcagctggctcgacaacagcgagctggagatccaccccgcgctgggt
gacgagaccctcgcagcccgccatcaagcggccatgagtcgcatcggggcggtgaaagat
gcctggctggcgcaaggggacgagatccgccgccagacagaggggcaaatcaagctctat
accggcaagaactacgagggctggctcgccaagataggcgactgggcacaggatccgacc
agcggttataccctgcccaaggatctcgagcgcttcggccaggaaaccctggaggccaag
ctgagcaaggggaaggcgttaccaaccctgccgctatttacccagatcgacgagctgctg
gcgagccgccccgatattcgggatctgatcctgcaacgggccgccagggtggtacgcagc
cggatgcagtccagcaagcggcaggcccatcagctctcgttcgatgacctgctgaaagat
ctcgatggggcgctcggctccagcctgggcgagcggctctgcgatcgcattcgcgccacc
taccgggtggcgatgatcgatgaatttcaggataccgacccccagcagtaccgcatcttc
catcgcctctacggcggccatcaggatacggcgctgttgatgatcggtgaccccaagcag
gccatctacggctttcgcggtgccgacatctttacctacatccaggcgcggcgaaatgtg
agcgcccactacaccctcgggcgcaactggcgctccagcagtgcgctggtgggggcggtc
aacggcctgttcgagcgagcgaaagatccctttatctacgaggcggatatccccttcctg
ccggtggaggcgcagggcaagagcaaggcgctgctgctcgatggcgccactgccccggtg
ctccactgctggcagctgagcggccagcccaccttcaatcggggggattaccagagcaag
atggcccgcgccaccgccgccgagatccaccgcctgctgaccctggcccgcgagggcaag
gcgaagataggtgatcaggcggtcaaggccggggatatcgccgtgctggtgcgtaccggc
gccgagggcaagctggtgcagcaggagcttgcgcggctcgccatcgcctccgtctatctg
tcgaaccgcgagagcgtgctggagcaggtggaggcgcgggaaatcctgctaattttgcac
gcctgccagaacccgagcgaagagcggagcctcagggcggcgctcgccaccggcctgttt
gatctcgatgccaaggcgctcgatgggctggccagcgacgagcgggcgtgggagagcgcg
gtgcaggagtttatggagtaccgcaagatctggcatcgccgcggcgtgctggcgatgctg
cgggccctgctgcaccggcgcaatctcgcctcctccctgctggcgagcccctatggcgag
cggcggctgaccaacttcctccatcttggcgagttgctgcaacaggtgagcagcgagctg
gacggggaatatgccctgctgcgctggctgggggaggcggtgagccgacccaacggacaa
gatgcggagcaggtactgcggctcgaatccgagcgcaagctggtgcagatcgtcaccatc
cacaaatccaaggggctggagtatccgctggtgttcctgccctttatctgcagccacaga
accgccgagaccccgctctatcacgaggcggacgaggcgggcaatcgcaccattctcgat
ctcaccggcgcagagggttccctggcggaggccgaccgcgagcgccttgccgaagatttg
cggctgctctatgtggcgctgacccggggcgtctacgccacctggctggggctggccccg
gtgcgctcgggcaacggcaagtcggagaagaccgacctgcaccacaccgccatcggctac
ctgctgcaaaagggcgaagagggggatgcacagacgctggcgaccgccctcaccgagctg
gcgcaggcgctgcccggggtggccgtcggtgagccctcgctcacccgtccggccccgatg
ccgccagaggaggagcagctgggcgagccgcaggtgcgccactttagcggttccctcgag
cgggattggtggatcagctcctactccgggctggcggcgcagggtcacggtcacagcaag
ggcgtgcttgccaaccccggtttcgatgacgaggtagtcaccgaggcggcttcattggct
tccgagcaaccggaggaggcaccccagccctccatcttcaccttcccgaaaggggcgcgc
cccggcaccctgctgcacagtctgttcgagaccatcgactttcagagcgccgctggcgag
tcgctggcagagcatatcgccaccctgctggcgcaggatggcttcgacgagagctgggcg
cccgtgctgcaacagcaggtggaggcggtgctggatactccgctggaaacgggctttggc
gagccggtgcggctgcgggatctggcccccgagcgcaaacaggtggagctggagttcttc
ctgcccatggggcgggtgacggcacaggcgctgaccgcgctctgccagcagcacgatccg
ctgtcgcggggcaacaagccgctcagctttgccaccgtgcaggggatgctcaagggcttt
atcgatctggtgttcgagtggcagggacgctggtatctgctcgactacaaatcgaaccac
ctcggcatgagcccggccgattacagccgtccggcgctggagcgggcgatggcggagcac
cgctacgacctgcaataccagctctactcgctggcgctgcaccggctgctcaccctgcgc
ctgccgggttacgacttcgagcagcactttggcggcgttttctatctgttcctgcgcggc
atgccgcaggggggcattttccatacccgcccgagccgtgaactggtgctggggctggat
gagttgtttagaaatggtgatcgctctggcggtgtgtcatcaacagaattaaacgaggta
gaggcatga
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