Aeromonas media: B224_5607
Help
Entry
B224_5607 CDS
T03075
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
amed
Aeromonas media
Pathway
amed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B224_5607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amed03021
]
B224_5607
03019 Messenger RNA biogenesis [BR:
amed03019
]
B224_5607
Transcription machinery [BR:
amed03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
B224_5607
Messenger RNA biogenesis [BR:
amed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
B224_5607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_22
AAA_25
AAA
Mor
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AHX63292
LinkDB
All DBs
Position
4382376..4383611
Genome browser
AA seq
411 aa
AA seq
DB search
MSELVQLGESMGLENLARAHKKDIIFAILKAHAKGGEDIFGDGVLEILTDGFGFLRSADG
SYLAGPDDIYVSPSQIRRFNLRTGDTVSGKIRPPKEGERYFALLKVNEVNYDRPENVRNK
ILFENLTPLHANERLRMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQN
IAQSIAYNHPDCELIVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHVQVADMVIEKA
KRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRFFGAARNVEEG
GSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVYPAIDITRSGTRKEEL
LTAPDELQKMWILRKIIHPMGEIDSIEFLIDKLAATKTNDEFFDSMKRQQK
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgagctggtacagcttggcgaatccatggggttggaaaatctggctcgggcgcac
aagaaagacatcatcttcgcgatcctcaaggcgcacgccaagggtggcgaggatatcttt
ggcgacggtgtgctggaaatcctgaccgacggctttggcttcctgcgcagtgcagacggc
tcctatctggcaggcccggacgatatctacgtctccccgagccagatccgccgtttcaac
ctgcgaaccggcgataccgtttccggcaagatccggccaccgaaagagggcgaacgttat
ttcgcgctgctcaaggtcaacgaggtcaactacgaccgcccggaaaacgtccgcaacaag
atcctgttcgagaacctgacccccctgcacgccaacgagcgtctgcgcatggagcgcggc
aacggctcgaccgaagacatcactgcccgcgtgctggacctggctgcccccataggtaaa
ggccagcgtggcctcatcgtcgcgccgcccaaggccggtaagacaatgctgctgcagaac
atcgcccagagcatcgcctacaaccacccggactgtgaactgattgtgctgctcatcgac
gagcgtcccgaagaagtgaccgagatgcagcgtatggtgaagggtgaagtgatcgcctcc
accttcgacgaacccgcttcgcgccacgttcaggttgccgacatggtgatcgagaaggcc
aagcgtctggtcgagcacaagaaggatgtggtgatcctgctggactccatcacccgtctg
gcgcgcgcctacaacaccgtcatcccctcatccggcaaggtactgaccggtggtgttgat
gccaacgccctgcacaggcccaagcgcttcttcggcgccgcccgtaacgttgaggaaggc
ggcagcctgaccatcatcgccaccgcactggtggataccggctccaagatggatgaagtc
atctacgaagagttcaagggtaccggcaacatggaactgcacctctcgcgcaagattgcc
gagaagcgcgtctacccggccatcgacatcacccgctccggcacccgcaaggaagagctg
ctgaccgcgccggacgagctgcagaagatgtggatactgcgcaagatcattcaccccatg
ggcgagatcgacagcatcgagttcctcatcgacaagctggcagccaccaagaccaacgac
gaattcttcgactccatgaagcgtcagcagaaataa
DBGET
integrated database retrieval system
