Peptoniphilus sp. GNH: LV469_02215
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Entry
LV469_02215 CDS
T07804
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
amei
Peptoniphilus sp. GNH
Pathway
amei03410
Base excision repair
amei03430
Mismatch repair
amei03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LV469_02215 (recJ)
03430 Mismatch repair
LV469_02215 (recJ)
03440 Homologous recombination
LV469_02215 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amei03400
]
LV469_02215 (recJ)
DNA repair and recombination proteins [BR:
amei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LV469_02215 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LV469_02215 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LV469_02215 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
EF-hand_FSTL1
Motif
Other DBs
NCBI-ProteinID:
UHR03121
LinkDB
All DBs
Position
complement(429976..431619)
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AA seq
547 aa
AA seq
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MREFLNPEISNLHSPILLPNLVKAGNILQNHLREKNKIRIVGDYDVDGIMSSFILTDSLR
KLGADVDFRIPLRVEEGYGINESIIEECLRDGIKLIITCDNGIAAFKPIELAREKFIDVI
VTDHHEIPLDENNEEILVTANAIINPKLKSSTYPFKDICGACVAFKLCEYMWMLSGKDLD
DFYNVYLGPLSIATICDVMPLVKENRIIVKNGLERLEKWDNVGFKALVDILGIKFPFSNY
HVGFIIGPTLNSSGRFEDAKMALNLLFEEQTDRALEMAENLKNINDQRKNKTEEAFKKGI
AMVESLDLLSKLSVLIIYLKDVHESICGIVAGKIKELYNRPTIVLTNTDKGLKGSGRSIE
SYHMFEKISKSKGFLKSFGGHKMACGLSLDEDLLKDFITDVQKKADLTEDDLFRKILIDA
KISFSDLNMDRVLNFKKLEPCGNENPQALFGTIGARVKGIQILGKNKNFIKIFLVENEKV
MEATLFEDGQAFVEKFSNIFSKEEVDKALKSVNNNIVLDICYSPVINEFMGKTSIQLKLK
SYRKSGV
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgagggaatttttaaatcccgaaatatcaaacttgcatagtcctattttacttcctaat
cttgtaaaggcgggaaatattcttcaaaatcacttgagagagaaaaataagattagaata
gttggcgattatgatgttgatggcattatgtcctcgtttatcttgactgactcattaaga
aagcttggggctgatgtggattttagaattcccttgagagtagaagagggatatggcata
aacgaatcaataattgaagaatgcctaagagatggaataaagctaataattacttgcgac
aatggtatagctgcttttaagcctatcgaattggctagagaaaaatttatagatgtgatt
gtgacagatcaccacgaaatacctctcgatgaaaacaatgaagagattttagttactgcc
aatgccatcataaatcccaaactaaagtcatcaacatatccattcaaagacatatgcgga
gcctgcgtagcttttaagttatgtgaatatatgtggatgctttctggaaaggatttggat
gatttttataatgtgtatttgggaccactttcaattgcaactatttgtgatgtcatgccc
cttgttaaggagaacaggataatagtaaaaaacggcttggaaaggcttgaaaaatgggat
aatgttggattcaaggcactagttgatattttaggtattaaatttccattttctaactat
catgtaggttttattataggccccactctaaattcttctggaaggtttgaggatgcaaag
atggctttaaatcttttatttgaagagcagactgatagggctttggagatggctgaaaat
ttaaagaatataaacgatcaaagaaagaataaaacggaagaagcttttaagaaaggcata
gccatggttgagtctttagatttgttatccaagttaagtgttttaataatatatctaaaa
gatgttcacgagagcatatgtgggattgtagctggtaaaataaaagagctctacaataga
ccaaccatcgtgcttacaaatactgacaagggactaaagggatctggcaggagcattgaa
agctaccatatgtttgaaaaaataagcaagtctaaggggtttttgaaatcttttggagga
cacaagatggcatgtggtttatcacttgatgaagatttgcttaaagattttataactgat
gttcaaaaaaaagctgatttaacggaagatgatttgttcagaaaaatcttaattgatgcc
aaaataagctttagcgatttgaatatggatagggtcttgaattttaaaaaacttgagcct
tgtggtaatgagaacccccaagctctttttggaaccataggagcaagggtaaaaggaata
caaatattagggaaaaataaaaattttataaaaatatttttagttgagaatgaaaaagtg
atggaagcgacattatttgaagatggacaagctttcgtagaaaagttttcgaacatattt
tctaaagaagaggtcgacaaggctttgaaatcagttaacaataacatagtcttggatata
tgttatagtccagttataaatgagtttatgggcaaaacgagtatacagctaaaattgaag
tcatatagaaagtcgggtgtttag
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