Peptoniphilus sp. GNH: LV469_03965
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Entry
LV469_03965 CDS
T07804
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amei
Peptoniphilus sp. GNH
Pathway
amei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LV469_03965 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amei03021
]
LV469_03965 (rpoC)
03400 DNA repair and recombination proteins [BR:
amei03400
]
LV469_03965 (rpoC)
Enzymes [BR:
amei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LV469_03965 (rpoC)
Transcription machinery [BR:
amei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LV469_03965 (rpoC)
DNA repair and recombination proteins [BR:
amei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LV469_03965 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
PASTA
DUF6904
Motif
Other DBs
NCBI-ProteinID:
UHR03454
LinkDB
All DBs
Position
complement(795265..798849)
Genome browser
AA seq
1194 aa
AA seq
DB search
MGERELFHSIRIGLASPEKIREWSYGEVKKPETINYRTLRPEKEGLFCEKIFGPTKDWEC
GCGKYKRIRFKGIVCEKCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRALEKILYFAAYVVTEVEEGFTEVYVKQLLTELEYRELKGEYGDKFTAKMGAEAVKEL
LKQIDLDRESEDLKNQLENASGQKRVRISRRLEVIEAFIQSGNKPEWMILEAIPVIPPDL
RPMVQLDGGRFATSDLNDLYRRIINRNNRLRKLLDINAPDIIVRNEKRMLQEAVDALIDN
GRRGRPVTGPGNRPLKSLSEMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKFYQCGLP
KKMALELFKPFVMRELVKNGSAHNIKSAKRMVERAKEEVWDVLERVIKDHPVLLNRAPTL
HRLGIQAFEPVLVEGKAIKLHPLVCTAYNADFDGDQMAVHLPLSAEAQAEARLLMLSTNN
ILALKDGKPITTPTQDMILGCYYLTLGIRDGLKGEGMVFKDYEEMMHAYANGYVHLQSKV
SMRIFKDDKDKRGKIIKSTVGRFLINKYIHQDLGFVDRSKDPYGLEIDQVIDKKLLGQII
EKTYNKHGNIETAKFLDHIKELGYHYSTVAATSISMSDVIVPETKKEILDKAGAEVDKYE
KAFRRGLISDEERYERVIEIWNSATDELTDEVMESFDRLNNIYIMADSGARGSKNQIRQL
AGMRGLMASPSGRTIEVPIKSNFREGLSVLEFYMSTHGSRKGLADTALRTADSGYLTRRL
VDVAQQVIVVEEDCGTDEYLVARAFKDGKELIESLKDRIEGRYSSEDIKDPNSGDLIVGK
GEEITTDLAQKIVDAGIEEVKVRTVLGCKCKTGVCAHCYGKNMATGNSVGIGEAVGVIAA
QSIGEPGTQLTMRTFHTGGVAAAADITQGLPRVEELFEARKPKGLAVITEIAGKVEIKEQ
NKKREVVITSDDGQVAKYNIVFGQRIKVRNDDYVEKGDELTEGSVYPQDLLKVKGPKGVE
EYIVKEVQRVYRLQGVDINDKHIEIIVRQMLNKYKIEDPGDTTFLPGSMVDSSDFKRENK
KMEEEGKKPATGEVTLLGITKASLATESFLSAASFQETTRVLTDAAIKGKEDKLLGLKEN
IIIGQLIPAGTGVRKNSNVQIAISDKLKENFEILENSEVIKRPQEDSEEETIEE
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
ttgggtgaacgtgaattatttcattcgataagaataggacttgcatctcctgaaaaaata
agggaatggtcctatggagaagttaaaaaacctgaaaccataaattacagaacactaaga
ccggaaaaagaaggcctcttttgtgaaaagatcttcggacctacaaaagactgggaatgt
ggttgcggaaaatacaaaagaataagattcaaaggcattgtttgcgaaaagtgcggagtt
gaagttacaaaatccaaagttcgtagagaaagaatgggccacatagagttggcagcacca
gtatctcatatttggtatttcaagggcattccatctagaatggggcttgctcttgatatg
agtcctagggctcttgaaaaaattctctattttgcagcatacgtagtaacagaagtggaa
gaaggtttcacagaagtctatgtaaaacaacttttgactgaattagaatacagagagcta
aaaggtgaatacggcgacaagttcacagcaaaaatgggtgcagaggctgtaaaagaactt
ttaaagcaaatagatttagatagagaatctgaagatttaaagaatcaacttgaaaatgct
agtggtcaaaaaagagtcagaatatcaagaaggctagaagtaatagaagcctttattcaa
tcaggcaacaagcctgaatggatgattttggaagccataccagtaataccgcctgatttg
agacctatggtccaattagacggaggaaggtttgcgacaagcgacttaaatgacctttac
agaagaataataaatagaaacaataggctcagaaaacttttagatataaatgcgcctgac
ataatagtaagaaatgaaaaaagaatgctccaagaagcagtagatgcccttatcgacaat
ggtagacgtggcagacctgtaacaggacctggaaatcgtcctttaaaatcactttctgaa
atgttaaaaggaaagcaaggtagatttagacaaaatcttcttggaaagcgtgttgactac
tctggacgttcagtaattgtcgtaggaccagatttgaaattctatcaatgtggtcttcct
aagaaaatggcgcttgaacttttcaagccatttgtaatgagagagcttgtgaaaaatggc
tcagcccacaatataaaatctgccaagagaatggtggaaagggcaaaggaagaagtttgg
gatgttttagaaagagtaataaaggatcatcctgttctcttaaatagagctcctacactt
cacagacttggtatccaagcctttgaaccagttcttgtagaaggaaaagcaataaagcta
catccacttgtatgtacagcctacaacgctgactttgacggggaccaaatggcagtccat
ctgcccctatcagccgaagcacaagcagaagcaagacttctaatgctttcaacaaataat
atcttggcactaaaagacggaaagcctatcacaactccaactcaagatatgattttagga
tgttattatctaactcttggaatcagagatggactaaagggcgagggcatggtctttaaa
gactacgaagaaatgatgcacgcctatgcaaatggctatgtacatcttcaatcaaaagtg
tccatgaggatatttaaagatgacaaagacaagagaggaaagataattaaatccacagta
ggtagatttttgattaataaatatatccatcaagacttgggctttgtagatagaagcaaa
gacccctatggacttgagattgatcaagtaatcgacaaaaaactgttgggacaaattatc
gaaaaaacttacaacaagcatggcaatatagaaactgctaagtttttagaccatataaaa
gaattgggttaccactactcaaccgtagctgcaacttcaatatctatgtcagacgtaata
gtgccagaaactaaaaaagaaattttggataaggccggtgcagaagtagacaaatacgaa
aaagcctttagaagaggtttgatttcagacgaagaaagatacgaaagagtaattgaaatc
tggaatagtgcaactgatgagcttaccgacgaagtaatggaaagcttcgacaggctaaat
aacatctacatcatggcagattcaggagccagaggttcgaaaaaccaaataagacagttg
gcaggtatgagaggacttatggcatctccatcaggtagaacaatagaagtgcctataaag
tcaaactttagagaaggactttcagttttggaattctacatgtctactcacggttctaga
aagggtcttgccgatacagctcttaggacagccgactcaggatatcttacaagaagactt
gtagatgtagctcaacaagtaatcgttgtggaagaagactgtggcacagatgaatatcta
gtagcaagagcgtttaaagatggcaaagaattaatagaaagcctcaaagatagaattgaa
ggaagatattcctctgaagacatcaaggatccgaatagcggagatttgattgtaggaaag
ggagaagaaatcacaacagatttggctcaaaaaatagtagatgccggcattgaagaagta
aaagtgcgaacagtcttgggatgcaaatgcaaaactggagtctgcgctcattgctatggc
aagaacatggcaacaggtaatagtgtaggcataggtgaagctgtcggagtaatcgctgcc
caatcaatcggtgaaccgggaactcagcttacaatgagaactttccacactggtggtgtt
gcagcagcagcagatatcacccaaggtcttccaagagtagaagaacttttcgaagcaaga
aagccaaagggtctagctgtaattacagaaattgcaggaaaagtcgaaataaaagaacaa
aacaagaaacgagaagttgtaatcacatctgatgatggacaagtcgccaagtacaacata
gtttttggacaaagaatcaaagtaagaaacgatgattatgttgaaaaaggtgacgaattg
actgaaggttctgtatatcctcaagaccttttaaaagttaaaggacccaagggcgttgaa
gaatatatagttaaagaagttcaaagagtatatagacttcaaggggtagatatcaacgat
aagcatattgaaataatagtaagacaaatgcttaataaatataagattgaagacccaggc
gatacgaccttcttaccaggatctatggttgactcaagcgacttcaaacgtgaaaataaa
aaaatggaagaagaaggcaagaaaccagccacaggagaagttacccttctcggtatcact
aaggcatccttggcaacagaatccttcctttcagcagcgtctttccaagaaacgacaaga
gtattaacagatgcagccataaaaggaaaagaagacaaacttttgggcttaaaagaaaat
ataataatcggtcaattgattccagctggaacaggggttagaaaaaattccaacgtacaa
attgccataagcgacaagcttaaagaaaattttgaaatattggaaaattccgaagtcata
aaaagaccacaagaagattcagaagaagaaacaattgaagaataa
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