Ascidia mentula (solitary sea squirt): 145897730
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Entry
145897730 CDS
T12084
Symbol
LOC145897730
Name
(RefSeq) replication factor C subunit 2-like
KO
K10755
replication factor C subunit 2/4
Organism
amen Ascidia mentula (solitary sea squirt)
Pathway
amen03030
DNA replication
amen03410
Base excision repair
amen03420
Nucleotide excision repair
amen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
145897730 (LOC145897730)
03410 Base excision repair
145897730 (LOC145897730)
03420 Nucleotide excision repair
145897730 (LOC145897730)
03430 Mismatch repair
145897730 (LOC145897730)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amen03032
]
145897730 (LOC145897730)
03036 Chromosome and associated proteins [BR:
amen03036
]
145897730 (LOC145897730)
03400 DNA repair and recombination proteins [BR:
amen03400
]
145897730 (LOC145897730)
DNA replication proteins [BR:
amen03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
145897730 (LOC145897730)
DNA Replication Termination Factors
ELG1-RFC complex
145897730 (LOC145897730)
Chromosome and associated proteins [BR:
amen03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
145897730 (LOC145897730)
DNA repair and recombination proteins [BR:
amen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
145897730 (LOC145897730)
Check point factors
HRAD17(Rad24)-RFC complex
145897730 (LOC145897730)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
AAA_22
Viral_helicase1
AAA_lid_RFC1
Rad17
nSTAND_NTPase5
Mg_chelatase
RCF1-5-like_lid
RuvB_N
AAA_16
AAA_assoc_2
AAA_11
nSTAND3
AAA_18
AAA_28
ABC_tran
AAA_19
DNAX_ATPase_lid
MeaB
SNF2-rel_dom
AAA_25
AAA_24
Rep1
NTPase_1
AAA_30
MipZ
Zeta_toxin
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
145897730
NCBI-ProteinID:
XP_082842263
LinkDB
All DBs
Position
4:complement(3989546..3991835)
Genome browser
AA seq
340 aa
AA seq
DB search
MEVDEPGSSKEIKSKPESTKRAYELPWVEKYRPTKLSEVVGNETTVSRLEVFAKEGNVPN
IIIAGPPGAGKTTSILCLARTMLGSCYKEAVLELNASNDRGIDVVRNKIKMFAQKKVTLP
KGRHKIIILDEADSMTNGAQQALRRTMEIYSKTTRFALACNQSDKIIEPIQSRCAVLRYS
KLSDAQILTRITEVIEKEDVRYTDDGLEAIIFTAQGDMRQALNNLQSTYQGFGFVNGDNV
YKVCDEPHPLLLKNMLDHCLKANLDEAYKIVHHLWAMGYSPDDIITNIFRVVKTHDMAEF
VKLEYIKQIAETHMRIVQGVNSLLQLSALLARLCRIQSAA
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggaagtggatgaacctggaagcagcaaagaaatcaaatccaaacctgaatcaacgaaa
cgggcatatgagcttccatgggtagaaaagtatcgaccaacaaagctttccgaagtggtt
ggaaatgaaactactgtgagtcgacttgaggtttttgccaaggaaggaaatgttcccaac
attattatcgcggggcctcctggtgcagggaaaacaaccagtattttgtgtttggctcgc
acaatgcttggttcctgctacaaggaagcagtattagaacttaatgcctcaaatgacagg
gggattgatgtggtgaggaataaaattaagatgtttgctcaaaaaaaggttactctgcca
aaggggagacacaaaatcatcattcttgatgaagcagacagtatgaccaatggagcacag
caagccttgcgcagaacaatggaaatttacagcaagactacaagatttgcattggcctgc
aaccagtccgataaaataatcgaaccaatacaatccaggtgtgcggttctgcggtatagc
aagttgagcgacgcacagattctcacaagaataactgaagttattgaaaaggaagatgtc
cgttatactgatgatggtttggaggccatcatatttaccgctcagggagatatgagacag
gcgctgaacaacctgcagtccacataccagggcttcggatttgtaaacggagacaatgtg
tataaagtatgtgatgaaccccatcctctgttgctaaagaatatgctcgaccactgcctc
aaagcaaacttggatgaggcttacaagatagttcaccacctgtgggctatgggttattcc
cctgatgacatcatcaccaacattttccgtgtcgtgaaaacccacgatatggcggagttc
gtgaaactcgagtatataaagcagattgcggagacgcacatgcgcatagtgcaaggcgtc
aactcccttctgcagctttctgcgttgttggctcgtctgtgtcgtatccagtcagctgcc
taa
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