Anopheles merus: 121597218
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Entry
121597218 CDS
T08889
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
amer
Anopheles merus
Pathway
amer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121597218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amer03019
]
121597218
03041 Spliceosome [BR:
amer03041
]
121597218
03009 Ribosome biogenesis [BR:
amer03009
]
121597218
03016 Transfer RNA biogenesis [BR:
amer03016
]
121597218
Enzymes [BR:
amer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121597218
Messenger RNA biogenesis [BR:
amer03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121597218
Spliceosome [BR:
amer03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121597218
Complex C
U4/U6.U5 tri-SnRNP related factors
121597218
Ribosome biogenesis [BR:
amer03009
]
Eukaryotic type
Pre-60S particles
Helicases
121597218
Transfer RNA biogenesis [BR:
amer03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121597218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Death_3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
121597218
NCBI-ProteinID:
XP_041778753
LinkDB
All DBs
Position
3R:complement(36057732..36061236)
Genome browser
AA seq
1036 aa
AA seq
DB search
MSNVDDLFSVFDEQNDDDNGPVPVVEPASSASAKQPNNDAATSKKRESTTAAPKRELEVV
DVLSDEEQVAKKAKVESILDDINLDNIESRIKVHTIQSPEACTHEVAVYPDQKYMPLAPA
TGKPAKEYAFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAKSLADKQRVIYT
TPIKALSNQKYREFHEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGW
VIFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCHLHKQPCHVVY
TDYRPTPLQHYLFPAGGDGIHLVVDERGQFKEDNFNTAMNVLQTAGEAAKGDQKGRKGGL
KASNAGETNIFKIVKMIMERSFAPVIIFSFSKKDCEVYAMQMAKLDFNSSTEKKLVDEVF
NNAMDVLTEEDRQLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATET
FAMGLNMPARTVLFTSPRKFDGKDFRWVTSGEYIQMSGRAGRRGLDDKGIVILMIDEAVS
PAVGKDIVQGRADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQSSIPEIYKR
VQKKQKQLLAVEIKDEQSIISYHHVREQLDRLGQEFREYITRPVYLVPFLQPGRMIKIQS
DAGEFEWGIIVNFKKENADSKQNPLKTEQKVVIDVLLHVADGFEKEGIPKPCPPGKRGSV
EVVPVLHKLVSRISSLRVYYPNDLRPADNRRSVLKTIEEVKKRFPQGPPLLNPITDMHIK
EKEFQGIVDMIDKFEKRLFAHPLHESAGLERLYAQYMSKLELEKELRNEKNALREARSLL
QMSELKHRKRVLRRLGYCTAADVIEFKGRVACELSCADELLITEMVFNGTFTDLTPSQSC
ALLSCFVCDEKSNEMPAATHELSGPLRQMQDLARRIAKVSNECKVEVDEERYVESFKPFL
MDVVLCWCKGASFAQLCKMTDIFEGSIIRCMRRLEELLRQMVQASKTIGNTDLENKFSEA
IRLLKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtggacgatttgttcagtgtgtttgacgagcagaacgacgacgacaatggg
cccgtgccggtggtcgaaccagcgtcctcggcatcggccaagcagccaaacaacgatgca
gcgaccagcaagaaaagagagtcaacaaccgcagctcctaagcgtgagctggaggtggtg
gatgtgctgagcgacgaggaacaggtggcgaaaaaggcaaaggtggaatcgatactggac
gatattaacttggacaacattgaaagccgcatcaaggtacacacgatacagtcgccggag
gcatgcacacacgaggtggccgtttacccggaccagaagtacatgccgctcgcaccggcc
accggtaaaccggcgaaagagtacgccttcgtgctggatccgttccagaaggaagcgatc
ctgtgcatcgaaaacaatcagtccgtgctggtgtccgctcacacgtccgccggcaagacg
gtggtggccgagtacgcgatcgcgaaatcgctcgcggacaagcagcgcgtcatctacacc
accccgattaaggcactttcgaaccaaaagtatcgcgagtttcacgaagagttcaaggac
gtcggtctggtgacgggcgacgtgacgatcaatccgagcgcctcgtgcctgatcatgacg
acggaaattctgcgcaacatgctgtaccgtgggtcggagattatgcgcgaggtcggttgg
gtgatattcgacgaaatccattacatgcgcgacaaagagcggggcgtggtgtgggaggaa
acgctgatcctgctgccggacaatgtgcattacgtgtttctgtccgccacgataccgaat
gcgcgccagttcgccgagtgggtgtgccatctgcacaagcagccgtgccacgtggtgtac
acggactatcggccgacgccgctgcagcactacctgtttccggccggtggcgacgggata
catttggtggtggacgagcgaggccagtttaaggaggacaactttaacacggcaatgaac
gtgctgcaaacggcgggcgaagcggccaagggtgatcagaagggcaggaagggtggcctg
aaggcttcgaatgcgggcgaaacgaacatcttcaagatcgtgaagatgatcatggagcgc
agctttgcgccggtcatcatattctcgttcagcaagaaggactgcgaggtgtacgcgatg
cagatggccaagctggactttaactcgagcacggagaagaagctggtggacgaggtgttt
aacaacgcgatggacgtgctgacggaggaggatcgtcagctgccgcaggtggagaatgtg
ctgccactgttgcgccgcggcatcggcatccatcacggtgggctgttgcccatactgaag
gaaacgattgaaatcctgtttggcgaagggttgataaaggcactgtttgcgacggaaacg
ttcgcgatggggctgaacatgccggcccgcacggtgctgttcactagcccgcgcaagttc
gacggcaaagacttccgctgggtgacgtcgggcgagtacatccagatgtcgggccgggcg
ggacgacgcggtctggacgacaagggtatcgttatcttgatgatcgacgaggccgtgtcg
cccgcggtcggcaaggacattgtgcagggccgggcggatccgatcaattccgcgttccac
ctgacgtacaacatggtgctgaacttgctgcgcgtggaagagatcaacccggagtacatg
ctggaacggtcgttcttccagtttcagaaccaatcgtccataccggaaatttacaagcgc
gtgcagaaaaaacagaagcaactgctggcggtagagatcaaggacgagcagtcgatcatc
tcgtaccaccacgtgcgggagcagctcgatcggctggggcaggagttccgcgagtacatc
acgcggccggtctatttggtgccgttcctgcagccgggacgcatgataaagattcaatcg
gacgcgggagagttcgagtggggcattatcgtgaactttaagaaggagaacgctgactcg
aagcagaatccactcaagacggagcagaaggtggtcatcgatgtgttactgcacgtggcc
gatgggttcgagaaggagggcatccccaaaccgtgcccaccgggcaagcgcggctcggtc
gaggtcgttccggtgctgcacaagctcgtgtcgcgcattagctcgctgcgcgtttactac
ccgaacgatctgcgcccggcggacaatcgccgctcggtgctgaaaacgatcgaggaggtg
aagaagcgtttcccgcagggtccgccactgctgaacccgatcaccgatatgcacatcaag
gagaaggagttccagggcatagtggacatgatcgataagttcgagaagcgcctgttcgcc
cacccgctgcacgagtcggccgggctcgagcggctgtacgcgcagtacatgagcaagctg
gagctggagaaggagctgcgcaacgagaagaatgcgctgcgtgaagcgcgcagcctgctg
cagatgagcgagctgaagcaccggaagcgggtgctgcgacgattgggctactgtacggcg
gcggacgtgatcgagttcaaggggcgcgttgcgtgcgagctgagctgtgcggacgagctg
ctcatcaccgagatggtgtttaacggtacgtttaccgacctgacgccgtcgcaatcgtgc
gccctgctgagctgcttcgtgtgcgatgagaagagcaacgaaatgccggcagcgacccac
gagctttccggtccgctgcggcagatgcaggatctggcgcgacgcattgcgaaggtgtcg
aacgagtgcaaggtggaggtggacgaggagcgctacgtggagtcgttcaaacctttcctg
atggatgtggtgctgtgctggtgcaagggcgcctcgttcgcgcagctctgcaagatgacg
gacatcttcgagggctccatcattcgctgtatgcgccggctggaggagctgctgcgccag
atggtgcaggcgtcgaaaacgatcggcaacacggatctggagaataagttctccgaagcg
atccggttgctgaagcgtgatatcgtgtttgccgcctcgctctacttgtag
DBGET
integrated database retrieval system
