Anaplasma marginale Florida: AMF_091
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Entry
AMF_091 CDS
T00855
Symbol
mfd
Name
(GenBank) transcription repair coupling factor (mfd)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amf
Anaplasma marginale Florida
Pathway
amf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMF_091 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amf03400
]
AMF_091 (mfd)
Enzymes [BR:
amf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMF_091 (mfd)
DNA repair and recombination proteins [BR:
amf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AMF_091 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACM48979
UniProt:
B9KHL7
LinkDB
All DBs
Position
complement(101180..104638)
Genome browser
AA seq
1152 aa
AA seq
DB search
MFSVLVERHRSARGPLLGLVRHQRAFVGVHVGSLEVITGVAPEFGDMLMAQMCMEDRHTP
FVFVVQEGTSLAHLAKTLKFFDRERDVFILPKWDSIPHKGVSPSSLVMATRMKCLLDISN
AKAPYVMLTTSGAVAQKVLPAHSVASATITVAPGDGLSMDALVQHLVACGYTQSSAVREV
GSFAVRGEIVDIFQPIDNKPTRIDFCYDAVESIRCFDLDTQITDGGALPSLVIYPASEVI
KTEENLNRFYTRYMQQYPNPDPAFAEAMLSRQKCMGEEQWLPLLQADELSTIFDYVPNAK
LVLAEQASEEVLRRLEGAQEEDYTAQSATGKSALFLDLQGYIQITRSFHKAIFCRFDATS
ENNLWEHQQVICSSSNIGAVPNFRLLAQEQKADVFAVAADYINSAHKTLILACYSEGSLL
YFIDKFKAHGIHISRVHEYAGPIGAFNAAVLPTSCDVVTHDFIVITEYSLLKRQCAAGRS
SGTVVSEDTCLAVGDVVVHKDYGVGIFNALRTLSVCGHLHDFVEILYRNNDKFFVPVEDI
DLITKYGTNTDVVLDKLGSTSWQERSAKLKKRIKDIAQTLLHSEAMRVLAEGNKFLANQR
YLDFCKEFPYVETEDQLKAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINED
PAKQVAVIVPTTLLCRQHLAAFRERFQNYDINVQQLARSSATQKSKVKKALENGDINIII
GTSALLAEDIRFLDLSLLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLS
GIKNLSVLRTPPMGRMAVDIAIIQYDGNIIKTAILDEVSRGGRVFFTCPFISDIDGVLAD
LQKLVPNVKVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNA
DMFGLAQLYQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVRSLNSVGSGFALALQ
DMDMRGFGNLVGEEQSGNIKEVGIELYHKMLEEAIAACQEQPHIQAGCHSVKVGVDANVR
IPESYIRELDLRIRVYKKISSLKTAEEADTCFVELVNRFGAPPPEVMNLLNVMRIKQLCS
ALGIQEVTQAKRHVTFSLSQGTAAHSGMLKHIIDNHDLFTICDHSIRMSVPKASQNQILE
YILSHLVCMAAA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
ttgttttctgtgctcgtggagcgtcaccgtagtgcgcgtggcccactgttggggttggtt
cgtcatcagcgcgcgttcgtaggcgtacacgtgggctctcttgaagtaatcaccggcgtt
gctccagaatttggagacatgctcatggcccagatgtgcatggaagatcggcacacaccg
ttcgtgttcgtcgtacaggaaggcacatccctggcgcatttggcaaaaaccctgaagttt
ttcgaccgggagcgcgatgtgtttatcctgcccaagtgggattccattccacacaagggg
gtctcacccagtagcctggtcatggcaaccaggatgaagtgtttgcttgacatttctaat
gccaaggccccgtacgtaatgttaacaacctccggcgcagttgcgcagaaagtgctgccg
gcacactctgtggccagtgccaccataacagttgcacctggcgatggtttgtctatggat
gcgctggtacaacatctggtggcatgcggatatacgcaatcttccgcggtgcgcgaagtg
gggagctttgcagtacggggggaaatcgtcgatattttccaaccaatagataacaagccc
accaggatagacttctgctacgatgctgttgagtctatcagatgtttcgaccttgatacg
caaattacggatggaggcgcgttaccaagtttggttatctatccagcatctgaagtaata
aaaaccgaagaaaacttaaatcggttctacacaaggtacatgcagcagtatccaaatccc
gatccggcatttgctgaagccatgctttccaggcaaaaatgcatgggagaggagcagtgg
ctgccgctgctgcaggcagatgagctgtcaaccattttcgattatgtcccaaacgcaaaa
ctagtgcttgctgagcaggcttcggaagaagtattgcggcgcttggaaggggcgcaggag
gaggattatacggcacaatctgccacaggaaaaagcgctttgttcttggatttacaaggc
tacatacaaattacacggagctttcacaaggccatcttctgccgctttgatgcaacatca
gaaaacaatctctgggagcatcaacaagtcatatgctcttccagcaatattggcgctgtg
ccgaatttcaggttgctagcacaggaacaaaaggctgacgtattcgcggtggccgcggat
tatattaactccgcccataaaactctaatcctcgcctgctactctgaaggatcactgcta
tatttcatcgacaagtttaaagcacatggcatacacatatccagagtgcatgagtatgca
ggccctataggcgcgttcaacgcggctgtgctaccaacaagttgtgacgttgtaacacac
gactttattgtgataacagaatacagcctgttgaaacgtcaatgcgcggccggtcgctcc
tctggcacggtagtcagtgaagacacctgccttgcagtaggagacgtagtagtacacaag
gactacggcgttggcatatttaatgcgctacgcacgctcagtgtgtgcggacatttacac
gactttgtcgaaatcctctaccgcaataacgacaaattcttcgtcccggtggaagatata
gacttgatcacaaaatacggcaccaataccgacgtcgtcctggataaactcggcagcacc
tcatggcaggagcgcagcgccaaactcaagaaacgcatcaaagatatcgctcaaacgttg
ttacactcagaagcaatgcgcgtacttgcggaaggcaataagtttcttgcaaatcagagg
tacttggacttttgcaaagagtttccatacgtagaaaccgaagaccagctcaaagcaata
tcagaagttgaggaggatctcgccagcggcaaggtgatggacaggctcatatgtggagac
gttgggtttggcaagacggaagtcgcactgcgcgcggcatttctagtcatcaacgaagat
ccggccaagcaggttgccgtaatcgttcccacaaccctactatgcaggcagcatcttgcg
gcattcagagagagatttcaaaactacgatatcaacgttcagcagcttgcacgatcatcc
gccacgcaaaagtctaaggtaaaaaaggcgctcgaaaacggggatatcaacataatcata
ggtacgagtgcgcttctcgcagaagatataagattcctagacttgagcttgctcattatt
gatgaagaacaacacttcggcgtacaacagaaagaacagctcaaaaagctcaggaatgac
gtgcacgttctatccttatccgcaacaccaattccccgaactctgcacatgtcgctttcc
gggataaaaaacttgagcgttctcaggaccccacccatggggaggatggccgtagatatt
gctatcatacagtacgatggcaacatcataaaaaccgcaattctagatgaagtcagccgc
ggtggcagagtgttctttacctgcccgtttatttctgacattgacggcgtgttggcggac
ctacaaaaactggtcccaaatgtgaaggtcgaagtggcgcatggcagaacatctaccagg
gcgttggataagattatgaatgactttttcgatgggaagttctccgtccttctgacaaca
tccatcatcgaaagtggaatagatatacctttcgccaacaccataatagtgcacaatgct
gacatgttcggcttggcacagctgtaccagctcaagggaagggtgggccggagcacgctg
aagggttatgcctacttcatagtgtcaaaaaaggcgctgcccgattcacctggcatgaag
aggctagaagcggtcaggtctctaaatagcgttgggtcgggctttgccctcgccctacag
gatatggacatgcgcggctttggaaatctggtgggggaagagcagtctggcaacataaag
gaagtgggaattgagctgtatcataaaatgctggaagaagccatagcagcgtgccaggag
caaccccacatacaagcgggctgccacagcgtaaaagtgggcgtagacgcgaatgttagg
attcctgaatcttacatcagggagctagatctgcgtataagagtgtacaaaaaaatcagt
agcttgaaaaccgcggaggaagcggatacctgctttgtcgagctagtaaacagatttggc
gcgccaccaccggaggtcatgaatttgctgaatgtaatgcgcatcaaacagctttgctcc
gcactcggcatacaagaggtcacgcaagcgaagcggcacgtcacgttttcactgtcgcag
ggcacagcagcgcattcaggaatgttgaagcacataatagacaaccacgatctctttacc
atatgtgaccacagcatcaggatgtcagtacccaaggcatcacagaatcaaatactagag
tatatattgtcccaccttgtatgcatggccgctgcttaa
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integrated database retrieval system
