Alteromonas macleodii English Channel 673: AMEC673_02805
Help
Entry
AMEC673_02805 CDS
T02254
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amg
Alteromonas macleodii English Channel 673
Pathway
amg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMEC673_02805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amg03019
]
AMEC673_02805
03009 Ribosome biogenesis [BR:
amg03009
]
AMEC673_02805
Enzymes [BR:
amg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMEC673_02805
Messenger RNA biogenesis [BR:
amg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMEC673_02805
Ribosome biogenesis [BR:
amg03009
]
Prokaryotic type
rRNA helicases
AMEC673_02805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFT73262
UniProt:
A0AB32ZUS4
LinkDB
All DBs
Position
complement(647071..648861)
Genome browser
AA seq
596 aa
AA seq
DB search
MTTTVDMTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEERKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPE
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRI
MEVEVFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL
VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQDDSIESLMPIVEMIKEENEASPE
VLMAALLKIAQGDEPLILKESDRPDINSKPQRDSRERNSRDRDGRERKPRVPRGNRKPEE
GMQRFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDLPEGMPKETRDT
LQGTRVAGQRLNIREWSDTPPAKGRGDRGNRGDRAPRGNREDRPNRGDRENRKRKN
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaactgtcgacatgacatttaaagacctcaatttaccagaacctatcttacaa
gcccttgaaaaagttggctacgagaaaccgtctcctattcaagctgagagtattcctctt
ctacttgaaggtcacgatttactcggtcaggcacagacagggacaggaaaaaccgctgcg
tttgccctgcccatgttggcaaatatcgatcctgaagaacgtaagccgcaattactggta
ttggccccaacccgtgaactagctattcaggttgcagaggcgtttcaggtttatgcgagc
tttagtcaaaaaattaaagtacttccagtatacggcggtcagtcgtacgacaaccaaatt
cgccaacttaagcgcggcgttcaggtggttgttggtacaccaggccgtatcatcgaccac
attaagcgcaaaacgctagacttaagcgaacttaagttcttagtgctagacgaagctgac
gaaatgcttcgtatgggctttatcgatgacgttgaacttattcttagccacgcaccagaa
gagcgccaaaccgcactgttctcggcaactatgcctggcccaattaagaagattactcag
cgatacttgaaagaccctaagcacgttaaaattgcgtctaaggtaagtacagctagcacc
attcgccagcgttattgccaaattgcaccacaccacaagcttgaagcgctaacgcgtatc
atggaagtggaagtgttcgacggtatgatcatattcgtacgtacgaaaaccgctacggtt
gaactagcagataaactctctgctcgtggttacgacgtagaaccactaaacggtgatatt
cctcaggctgctcgtgagcgcactgttgaaaaacttaaacagggtaaaattgatatcctt
gtcgctactgacgttgtagcccgtggtcttgacgttgagcgtgtaagccacgttatcaat
tacgatatcccgtacgacagcgaatcttacgtacaccgtatcggccgtactggtcgtgct
ggtcgtcaaggtgatgcgatcctatttatctctcatcgcgaaaagcgcttgttattctct
atcgagaaaactaccaagcagcctattgaagcaatgccaattccttcaattagtgaaatt
aatgaaacacgtttaagccgcttcaaacaatcagttgccgaagcaacccaagacgatagc
attgaatcactaatgcctattgttgagatgattaaagaagaaaacgaagcgtcccctgaa
gtattgatggcggcactgcttaaaattgcgcaaggcgacgaaccgttaattcttaaagaa
tcagatcgtccagatattaacagcaagcctcagcgcgacagccgcgagagaaactctcgt
gaccgtgatggtcgtgagagaaagccaagagtacctcgtggaaaccgcaagcctgaagaa
ggcatgcagcgcttccgcattgaagtaggtcacgtacatggtgcgaagcctggaaatatc
gttggggctattgctaatgaagcaaacataaattcgaagcacattggcgctatcgaaatt
tatgacaacttcagcacggtagaccttcctgaaggtatgcctaaggaaacgcgcgatacg
ctacagggcacccgtgttgctggtcagcgtttgaatattcgcgaatggtcagatacaccg
ccggctaaaggtcgtggcgatcgtggtaaccgtggtgacagagcgcctcgcggcaatcgt
gaagaccgccctaatcgcggagatcgcgaaaaccgtaagcgtaagaactaa
DBGET
integrated database retrieval system
