Alteromonas macleodii English Channel 673: AMEC673_04030
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Entry
AMEC673_04030 CDS
T02254
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
amg
Alteromonas macleodii English Channel 673
Brite
KEGG Orthology (KO) [BR:
amg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amg03400
]
AMEC673_04030
DNA repair and recombination proteins [BR:
amg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AMEC673_04030
Archaeal homologous recombinant proteins
AMEC673_04030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_21
ABC_tran
nSTAND3
Ribosomal_L17
NTPase_1
SMC_N
cobW
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFT73503
LinkDB
All DBs
Position
933412..937149
Genome browser
AA seq
1245 aa
AA seq
DB search
MRILTLRLKNLNALKGEWKIDFTHSPFIDNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LGPISTSNNDIMTRGTAECLAEVEFDIKGKAYRAFWSMRRARGKVDGNLQSADVELAEVE
SGEVLATQVRPKSEEIEKLTGLNFARFTKSMMLSQGDFAAFLNANEADRAELLEELTGTE
IYGQISQAVHQQFSDAKQKKKEFAIKLDGVTLLSDEQITQLEEEQAQTKSQVAAFNQTLV
ELQKQQQWQHAFNANELAIKEASEAQQSANNAINEAKQKLDLLAQSEPAEKLRLPFLQRN
GLQQDVTRYKERLEEKAAQLPDLKSQKAQLSLEVTNAEQALALTKQQSSELEKRINEQVI
PLDNQIAQLTTEQQKANENKARLRQSINALTLKRTEIENASADNKTKLGELEAYLSEHHT
LSGIAEFISGWSETARHIEHDKKQLETLTQSVNNHRQALSSLDDAIAKTNESLSALRQTF
DDKNAQVAKCEKALQAALSDKPSDTNSANATSKASLQQERDTKLHHWDNVLQIGHIQQQY
LALEQEKVSLGAQKEDLAKQLAQQQSDRQALVDAYKQTRSNLKDIEALIALDAEVAHLRA
RLKSGEPCPVCGANEHTTSSVVIDVPETIQKRDSLKQQLDDIEQQGARAKESVTHTEFTL
AQVNKKLEQASGQRDTLLEKWQQISSVLSADIPSFEKIDINTSQSVAQFTQQFKTRLDDI
SAQLTRLEECEQALNAALQAKNEAQQLLQAKQSELAVSLQQRETFEKQFNERNVELENKT
QGINNSILALSETMTAHGADIHNLAIDGIATWLNEKAEALKTYKHNHQLHAKLKDELQGV
SSALLVVNRDIESAENQLKDVSEELVQLDNSLKALRDSRTTVFPEGNIAETRNKANAAQE
MAERNVNECKSRLQQTDTILSRLEAEIAQLNEQMREKEQALTEATEHFSRQLASSPFDDE
QAFSNALLDEDTRNTLLELQKRLAQQKQQADLKLENALATQQSLKAHANAAQWQSELEEH
GAQWLDTKITQQAQQRDTLLSSLGQIEQQLSANNQARERQQQLVDEMAAFEAYYDDITYL
HSLIGSASGDKFRRFAQGLTLDNLVQLANQQLDKLHGRYQLIRKENEGLGLSVLDTWQGD
VVRDTKTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDVALDALDN
LNASGKMIGVISHIEAMKERIPTQLKVIKRNGVGLSALEKPYAVG
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgagaatattgaccttacgccttaaaaacttaaacgccctaaaaggggagtggaagata
gatttcacccattcgccgtttatcgacaatggcctttttgccataactggcccaacaggg
gcaggtaaaaccacgctacttgatgctatttgtttagcgctttatcaccaaacccctcgc
ttgggaccaatttcaacgtctaacaacgacatcatgacccgcggcacggcggagtgtttg
gcggaggttgagtttgatattaagggaaaagcataccgtgcgttttggagtatgcgtcgg
gccagagggaaagttgacggtaacctgcaaagtgctgatgttgagctggccgaagttgaa
agcggcgaggtattggctacccaagttaggccgaaaagcgaagagattgaaaagctgact
ggccttaattttgcccgtttcaccaagtctatgatgttgtcgcaaggggattttgctgcg
tttttaaatgctaacgaggccgaccgagccgaactgcttgaagagttaactggcaccgaa
atttacgggcagatatcacaggcagtacatcagcaatttagtgacgctaaacaaaagaaa
aaagagtttgcgataaagctagacggcgtaaccttacttagcgacgaacaaatcacccag
cttgaagaagagcaagcacaaaccaagagccaagtcgccgcgtttaatcaaacactcgtt
gagctacaaaagcaacagcagtggcaacatgcgtttaacgctaacgaactcgccattaaa
gaagccagtgaagcacagcagagcgcgaataacgccatcaatgaggcgaaacaaaaactt
gatcttctcgctcaaagtgagccagctgaaaagcttcgcctgccatttttgcaaagaaac
gggcttcagcaagacgtaacccgttataaagaaaggcttgaagagaaagcagctcagttg
ccagacttaaaatcgcaaaaggcacagctcagtttggaagtgaccaacgctgaacaagcg
ctagcgcttacaaagcaacaaagcagtgagcttgaaaagcgcataaatgagcaggtgatt
ccgttagataaccaaatagcgcagctcactactgaacagcaaaaagcaaacgaaaacaag
gcacgtttaaggcagtcaataaacgcgttaacgctaaagcgcacagaaatcgaaaacgct
tcggcagataacaaaacaaagctaggtgaactggaagcttacttgagtgaacaccacaca
cttagcggcatagcggaatttataagtggttggagtgaaacggcgcgccatattgaacat
gataaaaagcagttagaaacactgacacaaagcgtaaataatcatcgtcaggcgctttca
tccctagatgacgctatcgcaaaaacaaatgagtcgttaagcgcgttaaggcagaccttc
gatgacaaaaacgcgcaagtagccaagtgcgaaaaggcacttcaggccgcgctatctgac
aaaccaagtgatactaatagtgctaatgcaaccagtaaagcaagtcttcagcaagagcgt
gataccaagcttcatcattgggataacgtattacagatagggcatattcaacagcaatat
ttggcactagaacaagagaaagtatcgctgggtgcgcaaaaggaagacttagcgaagcaa
ctagctcagcagcaatctgaccgccaagccttggttgatgcttacaagcaaactcgtagt
aatttaaaagacatagaggcgcttatcgccctggatgctgaagtggcgcaccttcgcgca
cggttaaaaagtggcgagccatgccctgtttgtggagctaacgaacacaccacgtctagc
gtggttattgatgtacctgaaactatccaaaagcgagatagtttaaagcagcagttagat
gatattgagcagcaaggggcgcgggcaaaagaaagcgttacacacactgaattcactctt
gctcaggttaataagaagctagaacaggcaagcgggcaacgagatacgctgctagaaaag
tggcagcagatttcaagcgtacttagtgctgatataccgagctttgaaaagatcgacatt
aatacttcgcaaagcgtcgctcaatttacccagcagtttaaaactcgtctcgatgatatt
agtgcccaattaacccgtttagaagagtgcgagcaagctctaaatgctgcattgcaggct
aaaaatgaagcgcaacagttgctacaagccaaacagtcagaacttgcagtttctctgcag
cagcgcgaaacctttgaaaagcaatttaacgaacgcaatgtagagctagagaacaaaaca
caagggattaataatagtattttagcgcttagcgaaactatgacggcgcacggtgctgat
attcacaacttggctattgatggaattgccacgtggttaaatgaaaaagccgaagcgctt
aaaacctataaacacaatcatcagctacacgccaaacttaaagatgagttgcaaggggta
agtagcgccttgcttgtggttaatcgtgatatcgagagcgccgagaatcagctaaaggat
gtatctgaagagcttgtgcagctagataatagtttaaaggcgctgcgagactcgcgcaca
accgtattccctgaagggaatattgctgaaacaaggaataaggcaaacgccgcccaagaa
atggctgagcgaaatgtaaatgaatgcaaatctcgtctacaacaaacggacactatattg
tctcgtttagaagccgaaattgcccagcttaatgagcaaatgcgcgaaaaagagcaggca
cttacagaggcaacagagcactttagtcgtcagttggcgagcagcccatttgacgatgag
caagcgtttagtaatgcgcttttagacgaagatacccgcaacaccttgcttgaactgcaa
aagcgattagctcagcaaaaacaacaagcggacttaaagctagaaaacgcgctagctacc
caacaatcgctaaaagcccatgctaacgcagcacagtggcagagcgagttagaagagcac
ggtgcacagtggctcgatacgaaaattacccagcaagctcagcagcgtgacacgctgtta
tcttctttagggcaaattgaacagcagctaagcgctaacaatcaagcccgcgaaaggcag
caacagcttgtggatgagatggctgcgtttgaggcctattacgatgatattacttacctg
cactcgttaattggctcggcaagcggcgacaaattcagacgttttgctcaagggcttact
ctggacaacttagtgcagcttgctaatcagcagctggataaattacacggtcgctatcag
ctaattcgaaaagaaaacgaagggttgggtttaagtgtattagacacctggcaaggtgac
gtggtgcgagacaccaaaaccctgtccggcggagaaagtttcttagtgagccttgcactg
gcattagctttatctgacttggtcagtcacaagaccagtattgattcgctgtttttggat
gaaggctttggcaccctagatgctgaaactttggatgtggcccttgatgcactagacaac
ttaaatgccagcggaaaaatgattggtgtaataagccatattgaagccatgaaagagcgt
attcctactcagcttaaagtgattaaacgcaacggtgtggggttaagtgcactagaaaaa
ccttatgcggtggggtga
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