Alteromonas macleodii English Channel 673: AMEC673_07955
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Entry
AMEC673_07955 CDS
T02254
Name
(GenBank) RNase E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amg
Alteromonas macleodii English Channel 673
Pathway
amg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMEC673_07955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amg03019
]
AMEC673_07955
03009 Ribosome biogenesis [BR:
amg03009
]
AMEC673_07955
Enzymes [BR:
amg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AMEC673_07955
Messenger RNA biogenesis [BR:
amg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AMEC673_07955
Ribosome biogenesis [BR:
amg03009
]
Prokaryotic type
rRNA processing factors
AMEC673_07955
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AFT74285
UniProt:
A0AB32ZXB8
LinkDB
All DBs
Position
complement(1883529..1886939)
Genome browser
AA seq
1136 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARTYFPKGYKFEGRPNIKDVIKEGQEVIVQIDKEERGQKGAALTTFL
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLDLPEGMGLIVRTAGVGKSYEEL
EWDLKVLLTHWEAISSVAEEREAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQA
LQHIQLVRPDFANRVKLYRGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMKDAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGESAHHVCPRCSGHGTIRGTESLAL
SILRILEEESIKENTGQIEAQLPVPVATYLLNEKRKSIQLLEKRHGVDLLLIPNANLDTP
HYQVLRRRPDDVISEASYDVELMPAVEAETETTTSAPVKREEPALKGLVAPTAAPVVAPK
EETAKKADDVPSLFARFGKWISDLFGSESEEETNKDKKPQSGNKNRNNRSRNNDDRRRKP
RNKNNRRGNQSQNRDQGKDQNRDGEQQDNRKPRGEQQRDQRQDQRQDQDDKRNNKGRKPR
KAQQPRDEQQKPKHEKQDGEQQDNQAQKKREVAERRKRRDKRRSVRVKKDDNAVNTAEQS
EAQATPVAKEAPVQHKAKADAKPKAPKAESPVENTAEQKKDEQKPAVKAAQKPADKPAEA
KPVSDAVKGEDDTSAVTSDAVDGTDANTDANSEEHGQKREGRGRSRRSPRHVRAAGQRRK
KESQQVDDSDTQAKQPGELSPQQPGAEIEATAKTYAPVVEETQAKEPGQLAPAEEQPVAK
QEKAKLDVEAVQDELQFDAEPLAGKEPLADAEPSAGKEPSANDKPSEAVDSTDEVTSADD
NAATEAKPAKEAQTSVQESNVEETAPAAQAEPAVEAKTTQADTASEAKDEATASPEQVEI
NLADAPVVAEPEAQVQEAKADTPAAKEEAEPTAAPSSSLAASGKGKRGASHPMALPAAVN
DAFVDVALTAKADDTRPALAVSGKTAAMSHVTSRASAVTTLPQSVDDVTEVAAVAE
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgcaactcagcaagaagagttgcgcgttgctcttgtcgat
gggcaacggttgtatgatttagatatagaaagtccaggacacgagcagaaaaaagcgaat
atctacaaaggtaaaattacccgcgttgaacccagcttagaagctgcttttgttgactac
ggtgcagagcgccatggcttcctacccctcaaagaaattgcccgcacttacttccctaaa
ggttacaaattcgaaggccgccctaacatcaaagatgtgattaaagaaggccaagaagta
attgttcaaattgataaagaagagcgcggccaaaaaggcgctgcattaactacattttta
tcgcttgcaggcagttacctagtacttatgccaaacaaccctcgcgctggcggtatttca
cgccgaatagagggcgacgagcgtacagagcttaaagagtcactaagcaaattggacctt
cctgaaggtatgggtttgattgttcgcactgcgggcgttggcaaatcttacgaagagcta
gaatgggatttaaaagtcttgcttacccattgggaagctatctctagcgttgctgaagaa
cgtgaagcccctttcttaattcaccaggaaagtaacgtaattgttcgtgctatccgcgac
tacctacgtcgcgatattggcgaaatccttatcgataaaaccagtatttatgagcaagct
ttacagcacattcaattagtgcgccctgactttgcaaaccgcgtaaagctctatcgtggt
gaagtgccgttatttagtcactaccaaatcgaaagccaaattgagtctgcattccaacgc
gaagtgcgtttgccttctggcggctcaattgttatcgacccaacagaagcactaacctct
atagatattaactctgcccgtgcaacaaaaggtggtgatattgaagagacagcgcttaac
acaaacctagaagcggcagacgagattgcccgtcaactgcgtcttcgtgacctaggtgga
ttggttgtaatcgactttattgatatgacgccagtacgtcaccaacgtgaagttgaaaac
cgcatgaaagacgcggtgagaagcgacagagcacgagtacaattgggtcgtatttctcgc
tttggccttttggaaatgtctcgccagcgtttacgcccttctttaggcgaatcagcgcat
cacgtgtgtcctcgctgttctggtcacggtaccattcgtggcactgagtctttggcactg
tctattcttcgtattttggaagaagagagcattaaagaaaacacagggcaaattgaagca
cagttgcctgttccagttgcgacctatctacttaacgaaaagcgtaagtcaattcagctt
ctcgaaaagcgtcacggcgtagatttactgcttattcctaatgcaaacctagatacaccg
cactaccaggtattacgcagacgcccagatgacgttatatctgaagcgagttacgacgta
gagttaatgcctgcggtagaagctgagacggaaacaacgacttctgcaccggttaagcgc
gaagagccagcactgaaaggccttgttgcaccaacggctgcacctgtagttgcgccaaaa
gaagaaacagcaaagaaagccgacgatgtgccttcactatttgcccgatttggcaaatgg
attagtgatttattcggtagcgaaagcgaagaagaaaccaataaagacaagaagccacag
tctggtaataaaaatagaaacaaccgcagccgcaataatgacgaccgtcgccgcaagccg
cgcaacaagaacaatcgtcgtggcaaccagtctcaaaacagagaccaaggtaaagaccag
aaccgcgatggtgagcagcaggataatcgcaaaccgcgtggcgaacaacaacgagaccag
agacaagaccagcgtcaagatcaagatgataagcgcaataacaaaggtcgtaagcctcgt
aaggcacaacaacctcgcgatgagcaacaaaagcctaagcacgagaagcaagacggcgaa
cagcaagacaaccaagcgcagaagaagcgtgaagttgctgaacgcagaaaacgtcgtgat
aagcgccgcagcgttcgtgtgaagaaagatgacaacgcggtgaatactgctgaacaaagc
gaagcgcaggccacaccagtagccaaagaagcgccagtgcagcacaaagctaaagctgac
gccaagcctaaagcgccgaaagcagagtcaccggttgaaaacactgctgaacagaagaag
gatgagcaaaagccagcagtcaaagccgcgcaaaagccagcggataaacctgctgaagcg
aagccagtatctgatgctgttaagggtgaagatgacacatcagcggtaactagtgatgcc
gttgacggcactgatgcaaataccgacgctaacagtgaagagcatggtcaaaaacgtgaa
ggccgtggccgttcacgccgctctccacgtcacgttcgtgccgctggtcaacgtcgtaag
aaagagtcgcagcaagttgacgattcagacacgcaagctaaacagcctggtgagttgtca
ccgcagcagccaggagcagaaattgaagcgacagctaagacatatgcgcctgttgtcgaa
gaaacacaagcaaaagagcctggccaactagcgccagctgaagagcaacctgttgctaag
caagagaaagcaaagcttgacgttgaagctgttcaggacgaacttcagtttgatgcagag
cctttagcgggtaaagagcctttagcggatgcagagccttcagcgggtaaagagccttca
gcgaacgataaaccttcggaagctgtagactcaactgatgaagtaacgtcagcagacgat
aacgcggcaactgaagctaaaccggctaaagaagctcaaacttcagtgcaagaaagcaac
gttgaagaaacagctccggcagcacaagcggaaccggcagttgaagctaaaacaacgcaa
gctgatacggcgtcagaagctaaagacgaagcaacggcatcgccagagcaagttgaaata
aacttggctgacgcacctgtagttgcagaaccagaagcacaggtgcaagaagcgaaagca
gatacgccagcggctaaagaagaagctgaaccaacagcagcgccttcttcgagcctagca
gcgagtggcaaaggaaagcgtggtgcatcgcaccctatggcattgcctgcagcagtaaac
gacgcatttgttgatgtagcgcttaccgctaaagctgacgacacacgacctgcactcgca
gtatcgggtaaaactgcagcgatgtcgcacgtaacgtcacgtgcatcagcagtaacaacg
cttcctcagtcggtagatgacgttaccgaagtagcagcagtggctgaataa
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