Alteromonas macleodii English Channel 673: AMEC673_09085
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Entry
AMEC673_09085 CDS
T02254
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
amg
Alteromonas macleodii English Channel 673
Pathway
amg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMEC673_09085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amg03019
]
AMEC673_09085
03016 Transfer RNA biogenesis [BR:
amg03016
]
AMEC673_09085
Enzymes [BR:
amg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AMEC673_09085
Messenger RNA biogenesis [BR:
amg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AMEC673_09085
Transfer RNA biogenesis [BR:
amg03016
]
Prokaryotic type
tRNA degradation factors
AMEC673_09085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AFT74511
UniProt:
A0AB32ZYN6
LinkDB
All DBs
Position
2140182..2142356
Genome browser
AA seq
724 aa
AA seq
DB search
MAILCAAFKSDKIKIEIKGQIVTPITKSFQYGQHTVTLETGVIARQATAAVLASMDDTSV
LVTVVGKKEAKADQDFFPLTVNYQEKAYAAGKIPGGFFKREGRPSEGETLIARLIDRPIR
PLFPEGFKNEVQVVVTVMSANPDIPTDIISMIGTSAALAISGIPFNGPIGAARVGYSNGE
YILNTRAEEQAESELDLVVAGTEGAVLMVESEASVLSEDTMLGAVMFGHEQMQTVVNAVN
EFAAEVGTEKWDWAPEAENTALKDKVKALAEAEMTAAYQISDKLERKDAVTAATEKALEA
ILAEDEEQDKKEVLDLLHDLESDVVRSRILSGAPRIDGRDPAMIRALDVATGILPRTHGS
ALFTRGETQALVAATLGTERDAQMIDELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRRE
IGHGRLAKRGIQAVMPSEEEFPYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKAS
VAGIAMGLVKSDDNFVVLSDILGDEDHLGDMDFKVAGTTEGITALQMDIKIEGITKEIMQ
IALKQAKEARLHILKVMDEAIGGHREELSEFAPRIYTMKIDQDKIRDVIGKGGAMIRQIT
EESDTNIEIEDDGTIKIFATERAKADIAISKIEQVTAEIEVGKTYNGKITRIVDFGAFVE
VLPGKEGLVHISQIAHERVNKVTDYLEEGQMVDVKVMEIDRQNRVRLSIKELLEKPAPKS
DDAE
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggctatactatgcgccgcgtttaaaagcgataaaataaagattgaaattaaaggacaa
atagtgactcctattactaaatcatttcagtatggacagcatactgtaactctagagacg
ggtgtaattgctcgtcaggcaacagctgcggttcttgcgagcatggacgatacgtctgta
ctggtaacagtagttggtaaaaaagaagccaaagcagatcaagacttcttcccacttact
gttaactaccaagaaaaagcgtacgctgcgggtaaaatcccaggtggtttcttcaagcgt
gaaggtcgtccatctgaaggtgaaacactgattgcacgtcttatcgaccgtccaatccgc
ccattattcccagaaggtttcaaaaacgaagtacaagttgttgttactgtaatgtctgct
aacccagatatccctacagacatcatctctatgattggtacttcagcagcccttgctatc
tctggtattcctttcaacggcccaattggtgcggctcgtgttggttatagcaacggtgaa
tacattctaaatacacgcgcagaagagcaagctgaaagcgagcttgaccttgttgttgcg
ggtactgaaggcgcagtacttatggttgaatcagaagcaagcgtgctttctgaagacacc
atgctaggtgcggttatgttcggtcacgagcaaatgcaaactgtagttaacgcagttaac
gaatttgctgctgaagttggcactgagaagtgggactgggcaccagaagcagaaaacact
gcgcttaaagacaaagttaaagcactagctgaagcagaaatgactgcggcttaccagatt
tctgacaagttagagcgtaaagacgcagtaactgcagcaactgaaaaagcactagaagct
atccttgctgaagacgaagaacaagacaagaaagaagtactagaccttcttcacgacctt
gagtctgacgttgtacgttcacgcattctatctggcgcgccacgtatcgatggtcgtgac
ccagcaatgatccgtgcactagacgtagcaacaggtattcttcctcgtactcacggttct
gcactatttactcgtggtgaaactcaggcacttgtagctgctacgcttggtacagagcgt
gacgcacagatgattgacgagcttcaaggtaagcgcgacagccgcttcatgcttcactac
aacttccctccatactgtgttggtgaaaccggtatgattggttcacctaagcgtcgtgaa
attggtcacggtcgtctagcgaagcgtggtattcaagcagtaatgccaagtgaagaagaa
ttcccgtatgtagtacgtgtggtttctgaaatcacagaatcaaacggttcatcttcaatg
gcgtcggtatgtggtacttcactagcgcttatggatgcaggtgttccaattaaagcgtct
gttgcgggtatcgcaatgggtcttgttaagagtgacgacaactttgttgtactttcagac
atccttggtgacgaagatcaccttggcgacatggactttaaagtagcgggtactaccgaa
ggtattactgcacttcaaatggacattaagattgaaggtatcactaaagaaatcatgcaa
attgcgcttaaacaagcaaaagaagcacgtttgcacattcttaaagtaatggacgaagcg
attggcggtcaccgtgaagagctaagtgaatttgctccacgcatttacaccatgaagatt
gaccaagacaagattcgtgacgttatcggtaaaggcggcgcaatgatccgtcaaattact
gaagagtctgacactaacatcgagattgaagacgacggtactatcaaaatcttcgcgaca
gagcgtgcgaaagcagacatcgctattagcaagattgagcaagtaacggctgaaattgaa
gttggtaagacttacaacggtaagattacacgtattgtagacttcggtgcgtttgtagaa
gtacttccaggtaaagaaggtcttgttcacatttcacaaatcgctcacgagcgtgtgaac
aaagtaactgactacctagaagaaggccaaatggttgacgttaaggttatggaaatcgat
cgccaaaaccgtgtacgtctaagcattaaagagcttctagaaaagcctgcgcctaagtct
gacgacgcagagtaa
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