Alteromonas macleodii English Channel 673: AMEC673_15975
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Entry
AMEC673_15975 CDS
T02254
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
amg
Alteromonas macleodii English Channel 673
Pathway
amg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMEC673_15975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amg03019
]
AMEC673_15975
Enzymes [BR:
amg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMEC673_15975
Messenger RNA biogenesis [BR:
amg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMEC673_15975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AFT75877
UniProt:
A0AB33A2K9
LinkDB
All DBs
Position
complement(3733009..3734460)
Genome browser
AA seq
483 aa
AA seq
DB search
MSFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPIL
QRLMEGQPVSGNNVRALILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQMMKL
RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPQERQ
SLLFSATFSDEITALAKTITRNPVSISTAPANTTVEAVQQHLVTIDKSKKTTALICLIKQ
QKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAIKVLVAT
DIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQNLKDIET
LIQKLLPRETLEGFEPQQAVPVTTLSKPKKPKKPKKPKAPQGESGSEGKRSGENKKSGQR
QGNRSGNGNPRAGKPDSRNNSGGKPAGRRRSGSEGSAAKRPAKRRSNPSNSTTNNTASNR
AKA
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttacccaattagggctcgctgaacccttgttaaaagctattgaaaaacgaggg
tttagtacaccatcaccaatccaggaaaaggcaataccagaagtattgcaaggaaaggat
gtgttggcagctgcgcaaacgggaacagggaaaactgcaggatttggacttcctatttta
cagagattgatggaaggacaacctgtatctggcaacaatgttcgggcacttatcttaaca
cccacgcgagaacttgctgctcaggtagaagagagcatcagagcgttcagtgagtttttg
ccgttaaaaactgccgtggtatttggtggtgtagggattaatcctcaaatgatgaagctg
cgtaaaggtgtggatgtgttaattgctacgcctggacgactgcttgacctctaccagcaa
aacgctgttaagttttctcagcttgaagtgttggtattggatgaagccgacagaatgctt
gatatgggctttattcacgacattaagagagtactgaagctattgccacaagagcgtcaa
agcttactgttttcagccacgttttctgatgaaatcactgcgctggcgaaaacaataacg
cgcaaccctgtgagtatttcaaccgcgccagcgaataccacggtagaagcggttcagcag
cacttagtgaccattgataaatctaaaaagacgaccgcgcttatttgtctgatcaaacag
cagaagtgggagcaggtgttagtatttagccgcacgaaacacggtgctaatcgtattgca
gaaaagctaactcggtcaaaaattccaagtgccgctattcacggtaataaaagccaagga
gcgagaactaaagcgcttgctgactttaaaaatggcgcaattaaagtgctggtagccacc
gatatcgcagcacgcggcatcgacattagtgagttgcctatcgttgtaaacctagactta
cccaatacggcagctgattatgttcaccgaattggtcgtacagggcgcgcaggcgctagt
ggacaggcgtggtcatttgtatgtgctgaagaactgcaaaacctgaaagatattgagaca
ctgattcaaaagctgcttcctcgtgaaacgttggaaggtttcgagcctcagcaagccgtg
cctgttaccacgctgtctaagcctaaaaagcccaagaagccgaaaaagccgaaagcacca
caaggtgagagcggcagcgaaggtaaacgaagtggcgagaataaaaagtcgggtcaacgt
caaggcaaccgtagcggaaatggtaatccgcgcgcaggtaaaccggattcgcgcaacaat
agcggtggaaagcctgcaggtcgaagacgctcaggaagtgaaggaagtgccgctaaacga
ccagctaagcgcagaagtaatccgtcaaatagcaccactaataatacggcatcaaacagg
gcaaaagcgtaa
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