Alteromonas macleodii English Channel 673: AMEC673_17660
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Entry
AMEC673_17660 CDS
T02254
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amg
Alteromonas macleodii English Channel 673
Pathway
amg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMEC673_17660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amg03021
]
AMEC673_17660
03400 DNA repair and recombination proteins [BR:
amg03400
]
AMEC673_17660
Enzymes [BR:
amg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMEC673_17660
Transcription machinery [BR:
amg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMEC673_17660
DNA repair and recombination proteins [BR:
amg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMEC673_17660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AFT76210
UniProt:
A0AB33A2U4
LinkDB
All DBs
Position
complement(4153205..4157377)
Genome browser
AA seq
1390 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDNIRIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGMTTLERSQLLNEEEYLDALEEHGDEFEAKM
GAEAVFDLLTVLDVDADVAAMREELPSINSETKRKKITKRLKLLESFQQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKLVEREAPEVWDVLDDVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLTRDKVNGLGEGMVFTSPNEAEKAYRTG
NAELHSRVKVRITEYDIDEDGNKTEKVTLTDTTVGRAIFSLILPKGLPFEIINQAMGKKQ
ISRLLNACYRTLGLKDTVIAADQIMYTGFHYAMIAGASVGIDDMVIPAAKKDIIDAAEAE
VIEIQEQFQNGLVTAGERYNKVIDIWSNANEKVAKAMMDNLKTDIVINRDGEEEEQSSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITNDDCGTFEGVQMTPLIEGGDVVEPLRERVL
GRVVAEDVLKPGTNEVLVERNVLLDEALVDMLEANSVDQIMVRSVITCDNDFGVCAKCYG
RDLARGHMVGSGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTAGSLKL
HNAKFVRNSDGKVVIVSRSTELTVIDEQGREKERYKVPYGAVLSVDDGATIAAGDVVANW
DPHSHPIITERAAKISFADIDDSNTEMQQDELTGLTRIVVKDLAKVNSKEPKLILESDEF
GLQEIRLPSFTTIEAKEGKVANEGDVLARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEISGTIGFGKETKGKKRLVITPAEGDAYEEMIPKWRQLNVFEGEKVEKGEVIADGPE
SPHDILRLRGISAVANYIVNEVQEVYRLQGVKINDKHIEVVIRQMLRKCIITNPGDTQFL
EGEQVEVSNVKVANREIEKHGKIPAQYETQLLGITKASLSTESFISAASFQETTRVLTEA
AVQGKEDDLRGLKENVIVGRLIPAGTGFAYHERRAQRRKEQIEEMSVSAAEAEQALTEAL
NAGADEDTAE
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctaaagcaacaaaacaagaccgaagaattcgataatatt
cgaattggtctgtcttcacctgacatgatccgttcatggtcatttggtgaagttaaaaag
cctgaaacaatcaactaccgtacgttcaagcctgagcgtgacggtctgttctgtgcgcgt
atctttggtccagtaaaagactatgagtgtctttgcggtaagtacaagcgccttaagcac
cgtggtgttatctgtgagaagtgtggcgttgaagttacactgactaaagtacgtcgtgag
cgtatgggtcacatcgagctagctagcccggttgcacacatctggttccttaaatcactt
ccgtctcgtatcggccttatgcttgatatgacacttcgtgatattgaacgtgtactttac
tttgaatcatacgtggttacagagccaggtatgactacacttgagcgtagccaacttctt
aacgaagaagagtacttggatgcacttgaagagcacggtgacgagtttgaagcgaagatg
ggtgctgaggcagtattcgatcttctaacagtacttgacgtagacgcagatgttgcggct
atgcgtgaagagctgccttcaatcaattctgaaaccaagcgtaagaagattactaagcgt
ctgaaattgcttgagtcattccaacaatctggcaacaagccagagtggatgatcatgacg
gttcttccggtacttccgccagatttacgtcctctagtaccactagatggcggccgtttt
gcaacgtctgaccttaacgacttataccgtcgtgtaatcaaccgtaacaaccgtcttaag
cgtcttctagacctagctgctccagacattatcgtacgcaacgaaaagcgtatgcttcaa
gagtctgtagatgcgcttctagataacggacgtcgtggtcgtgcgattaccggttctaac
aagcgtccacttaagtcgcttgcagacatgatcaaaggtaagcaaggtcgtttccgtcaa
aaccttcttggtaagcgtgttgactactcaggccgttctgtaattaccgttggtcctacg
ctacgtcttcaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccgttt
atctacggtaagcttgaaggtcgtggtcttgcgacaacaattaaagctgctaagaagcta
gtagagcgcgaagcaccagaggtttgggacgtactagacgacgttatccgtgaacacccg
gtactacttaaccgtgcacctacacttcaccgtttgggtatccaagcattcgaaccaaca
ctaatcgaaggtaaagcgattcagcttcacccgctagtgtgtgcggcgtacaacgccgac
ttcgatggtgaccaaatggcggtacacgttccgttgacaatcgaagcacagctagaagca
cgtgcacttatgatgtcaacgaacaacattctgtcacctgcgaacggtgagccaattatc
gtaccttcacaggacgttgtattgggtctttactacctaacgcgtgacaaagtaaacggc
ttaggcgaaggcatggtattcaccagcccgaatgaagcagaaaaagcataccgtacaggt
aatgctgagcttcactctcgcgtaaaagtacgtattactgaatacgacatcgatgaagat
ggcaacaaaactgagaaagtaacgctaactgacactactgttggtcgtgcgattttctca
ttgatccttcctaagggtctgccgtttgaaatcatcaaccaagcgatgggcaagaagcaa
atttcaagactattgaatgcttgttaccgtacgctaggtttgaaagacacagtaattgct
gctgaccaaatcatgtataccggtttccactacgcgatgatcgcgggtgcgtctgttggt
atcgacgatatggttatccctgctgctaagaaagacatcatcgacgcagcagaagcagaa
gttatcgaaattcaggaacagttccaaaacggtcttgttaccgcgggtgagcgttacaac
aaagttatcgatatctggtcaaatgccaacgaaaaagttgctaaagccatgatggataac
cttaagactgacatcgtaattaaccgcgatggcgaagaagaagagcaatcatcatttaac
tctgtttacatgatggccgactcgggtgctcgtggtagtgccgctcagattcgtcagcta
gctggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaaccccaattacg
gcgaacttccgtgaaggtctgaacgtactacagtacttcatctcaactcacggtgctcgt
aaaggtcttgcggataccgcacttaagacagctaactcgggttacctaacgcgtcgtcta
gtagacgttgcacaagacttggtaatcactaacgacgactgtggcacattcgaaggtgtt
caaatgacaccactaatcgaaggtggtgacgttgttgaaccactacgcgagcgtgtacta
ggtcgtgtggtagcagaagatgtacttaagccaggtactaacgaagtgctagtagagcgt
aacgttcttctagacgaagcgttagtagacatgcttgaagctaactcagttgaccaaatc
atggttcgctcggtaatcacttgtgacaacgacttcggtgtttgtgctaagtgttacggt
cgtgaccttgctcgtggtcacatggtgggtagcggtgaatcggttggtgttattgcagca
cagtcaatcggtgagccaggtacacagcttaccatgcgtacgttccacatcggtggtgcg
gcatcaagagcatctgctgagaacagcgtacaagttaagacggcgggtagccttaagcta
cacaatgcgaagttcgtacgtaactctgacggcaaagtggttatcgtttctcgttcaaca
gaacttactgttatcgacgagcaaggccgtgagaaagagcgctataaagtaccttacggt
gctgtacttagcgtggatgacggtgcaactattgcagctggcgacgttgttgctaactgg
gatccgcatagtcacccaatcatcactgaacgagcagctaagattagcttcgcagacatt
gatgactctaacaccgaaatgcagcaagacgagcttactggtctaacccgtatcgttgtt
aaagaccttgcgaaagtaaactctaaagagcctaagctaattcttgaaagcgacgagttc
ggtcttcaagaaattcgtcttccaagcttcacaaccatcgaagcgaaagaaggcaaagtg
gctaacgaaggtgacgtgctagcacgtattcctcaagaaagctcgaagactcgtgatatc
acgggtggtctaccgcgcgttgcggacctatttgaagcacgtaagcctaaagagcctgca
atccttgcagaaatctcaggtactatcggcttcggtaaagagaccaaaggtaagaagcgt
cttgtaattacacctgctgagggtgacgcatacgaagagatgattcctaagtggcgtcag
cttaacgtattcgaaggtgagaaagtggaaaaaggcgaagttatcgccgatggtccagag
tctccacacgatatcctacgtctacgtggtatctcagcagtagcaaactacatcgtgaac
gaagttcaggaagtataccgtctacagggtgttaagattaacgataagcacatcgaagta
gttatccgtcagatgctacgtaagtgcattatcactaatccaggcgatacgcagttcctt
gaaggcgaacaggttgaagtatcgaacgttaaagtggctaaccgtgaaattgaaaaacac
ggcaagatcccagcgcagtacgaaacacaactgcttggtatcactaaagcgtcactgtct
actgagtcatttatctcagcggcatcgttccaagaaacaacacgtgttctaactgaagct
gcggttcagggtaaagaagatgacctacgcggtttgaaagaaaacgtaatcgttggtcgt
ctaattccagcgggtacaggtttcgcttaccacgaacgccgtgcacaacgtcgcaaagag
caaatcgaagaaatgtcagtgtctgctgctgaagcagaacaggcactaaccgaagcgctt
aatgctggtgcagacgaagatactgccgaataa
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integrated database retrieval system
