Alteromonas mediterranea 615: I633_03175
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Entry
I633_03175 CDS
T02719
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amh
Alteromonas mediterranea 615
Pathway
amh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I633_03175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amh03019
]
I633_03175
03009 Ribosome biogenesis [BR:
amh03009
]
I633_03175
Enzymes [BR:
amh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I633_03175
Messenger RNA biogenesis [BR:
amh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I633_03175
Ribosome biogenesis [BR:
amh03009
]
Prokaryotic type
rRNA helicases
I633_03175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGP76929
UniProt:
S5AC57
LinkDB
All DBs
Position
complement(622268..624037)
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AA seq
589 aa
AA seq
DB search
MTTTVDMTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPE
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRI
MEVEVFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL
VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQDDSIESLMPIVEMIKEENEASPE
TIMAALLKIAQGDEPLILKESDRPDINSKPPRDNRDRNSRDGRDGRERKPRVPRGNRKPE
EGMQRFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDLPDGMPKETRD
TLSGTRVAGQRLNIREWSDTPPKRDGRGSRGDKGDRAPRGNRENRKRKN
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaactgtcgacatgacatttaaagacctcaatttaccagaaccaatcttacaa
gcccttgaaaaagttggctacgagaaaccgtctcctattcaagctgagagtattcctctt
ttacttgaaggacacgacttactcggtcaggcacagacagggacaggaaaaaccgctgcg
tttgccctgcccatgttggcaaatatcgatcctgagcaacgtaagccgcaattactggta
ttggccccaacccgtgaattagcaattcaggttgcagaggcgtttcaggtttatgcgagc
tttagtcaaaaaattaaagtacttcccgtatacggcggccagtcgtacgacaaccaaatt
cgccagcttaagcgcggcgtgcaagtggttgttggtacaccagggcgtatcatcgaccat
atcaagcgcaaaacactagacttaagcgaacttaagtatttagtgctagatgaagcagat
gaaatgcttcgcatgggctttatcgatgacgttgagcttattcttagccacgcgccagaa
gagcgccaaactgcgctgttctcggcaaccatgcctggcccaatcaagaagattacccag
cgctatttgaaagatcctaagcacgtcaaaattgcgtctaaggtaagcactgccagcacc
attcgccagcgttactgccaaatcgcaccgcaccacaaacttgaagcgctaacccgcatc
atggaagtggaagtgttcgacggtatgattattttcgtacgcacgaaaaccgctaccgtg
gaacttgccgataagctatctgcccgtggttacgatgtagaaccactaaacggtgatatt
cctcaggcagcccgtgagcgtactgttgaaaagcttaaacagggtaaaatcgacattctt
gtagctactgacgtagtagcccgaggtcttgacgttgagcgtgtaagccacgttatcaac
tacgatatcccgtatgacagtgagtcttacgtacaccgtattggtcgtaccggtcgtgct
ggtcgtcaaggtgatgcaatcctatttatttctcaccgcgaaaagcgcttgttgttctct
atcgagaaaaccactaaacagcctattgaagcgatgcctattccttcaatcagcgaaatc
aatgagacacgcttaagccgtttcaaacagtcggttgccgaagcaacgcaagacgatagc
attgaatcattaatgcctattgttgagatgattaaagaagaaaacgaagcatcgcctgaa
accatcatggctgcgctacttaaaattgcgcaaggcgacgagccgttaattcttaaagaa
tcagatcgaccagacatcaacagcaagcctccacgcgataatcgtgatagaaactctcgc
gatggtcgtgatggccgcgaaagaaagccaagagtaccacgtggtaaccgcaagccagaa
gaaggcatgcagcgcttccgtattgaagtaggtcatgttcacggcgctaagcctggcaac
atcgttggcgctattgcgaacgaagcaaacataaactcgaagcacattggcgctatcgag
atttatgataacttcagtactgttgatttacctgacggtatgccaaaagaaacccgtgac
accctttcgggcacacgcgtagcaggtcagcgattgaacattcgtgaatggtcagacacg
ccacctaagcgcgacggtcgtggaagccgcggtgacaaaggtgatcgtgcacctagaggc
aaccgtgaaaaccgtaaacgtaagaactaa
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