Actinosynnema mirum: Amir_0563
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Entry
Amir_0563 CDS
T00957
Name
(GenBank) transcriptional regulator, AraC family
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
ami
Actinosynnema mirum
Pathway
ami03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Amir_0563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ami03000
]
Amir_0563
03400 DNA repair and recombination proteins [BR:
ami03400
]
Amir_0563
Enzymes [BR:
ami01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Amir_0563
Transcription factors [BR:
ami03000
]
Prokaryotic type
Helix-turn-helix
AraC family
Amir_0563
DNA repair and recombination proteins [BR:
ami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Amir_0563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
HTH_18
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
ACU34530
UniProt:
C6WJ98
LinkDB
All DBs
Position
612716..614470
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AA seq
584 aa
AA seq
DB search
MGAHAPADRHTTTHPPATDRPPATTGRATRGGAPTADRAPIGSRIPTAGQPAAASRVPAD
ASAPTTSRAATSHAGANAVAPAAGRTPVGRASADAGGPTAGRGAAGRVPAAAGAPAASHA
AASRASAGAGAPAAGRAAPGPAPAEVGAPATGHTTAPRPRAPHPFADHPTAPPTTDLVDP
TWGPRSDPVARALRMIVDGVVDREGVPGLATRLGYSVRQVERRLLAELGSGPLAIARARR
ARTARLLAETTALPMTEIAVAAGFASVRAFNETVRELFGRSPTDLRGGRRAPGGVPGAVV
LRLPFRGPLHAPSLFGPLVANAVPGVEEWRDGAYRRTLRLPRGHGVVSLRPRADHVECDL
TLTDSRDLPVAISRCRRALDLDADPAEVDGALRADPALRPLVDAAPGTRVPGVVDGAECA
VRALLGEGTGTGAAMGAGANAGWAHRVVREAGEAVPDPAGGGLTHLFPTPQALLDLDPAL
LPPPARAPLTALLTALVGGVDLGAGADRAEARSALRCAGERVLDAVLTRSLGDPDGFCPD
DPAVRAAAGGIGLPVTAAALADRSRAWRPWRAYATRYLLGRAPT
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
gtgggcgcccacgcgcccgccgaccgccacaccaccacccacccgcccgccaccgatcgc
ccgcccgccaccaccggcagggccacccgcggcggcgctcccaccgccgaccgcgccccg
atcggcagccggattccgaccgctggtcagcccgcggcggccagccgtgtccccgccgac
gccagcgcccccaccaccagccgtgctgccaccagccacgccggggccaacgcggttgct
cctgccgctggccgcacccccgttggtcgtgcctcggcggacgccggtggtccgaccgcc
ggtcgtggtgccgctggtcgcgtcccggccgctgctggcgcgcctgccgccagccacgcc
gccgccagccgtgcctcggccggtgcgggtgctcccgccgccggccgtgctgcccccggc
cccgccccagccgaagtcggcgcgcccgccaccggccacaccaccgccccccgcccccgc
gccccccaccccttcgccgaccaccccaccgccccacccaccaccgacctggtcgacccc
acctggggccccaggtccgacccggtggcccgggcgctgcgcatgatcgtcgacggcgtg
gtcgaccgcgagggcgtgcccggtctcgccacccggctcggctacagcgtccgccaggtc
gagcgccgcctcctggccgagctgggctccggcccgctcgccatcgcccgcgcccgccgc
gcgcgcaccgcccgcctcctggccgagaccaccgccctccccatgaccgagatcgccgtg
gcggcgggcttcgcgagcgtgcgcgcgttcaacgagacggtgcgcgagctgttcggccgc
tcgcccaccgacctgcgcggcggtcgccgggctcccggcggcgtgccgggcgcggtcgtg
ctgcggttgccgttccgggggccgctgcacgcgccgtcgctgttcgggccgctggtcgcg
aacgccgtccccggcgtcgaggagtggcgcgacggcgcctaccgccgcacgctgcgcctc
ccgcgcggccacggcgtggtctcgctgcgcccgcgcgccgaccacgtcgagtgcgacctg
accctcaccgactcccgcgacctcccggtcgcgatctcccgctgccgccgcgcgctggac
ctggacgccgaccccgccgaggtcgacggcgccctccgcgcggaccccgccctgcgcccg
ctggtcgacgccgcgccgggcaccagggtccccggcgtggtcgacggcgcggagtgcgcg
gtgcgcgccctgctcggcgaaggcacgggcacgggcgcagccatgggcgcgggcgccaac
gcgggctgggcgcaccgggtggtgcgcgaggcgggcgaggccgtccccgacccggcgggc
ggcggcctgacccacctcttcccgacgccgcaagcgctcctggacctggacccggccctg
ctccccccaccggcgcgcgccccgctcaccgccctgctcaccgcgctggtgggcggcgtc
gacctgggcgcgggcgcggaccgcgccgaggcccggtcggcgctgcgctgcgcgggcgag
cgcgtgctggacgccgtcctcacccgctcgctgggcgacccggacggcttctgccccgac
gaccccgccgtgcgcgccgccgcgggcgggatcggcctgccggtcaccgccgccgcgctg
gccgaccgctcgcgcgcgtggcgcccgtggcgcgcctacgcgacccgctacctgctgggc
cgcgccccgacctga
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