Actinosynnema mirum: Amir_2267
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Entry
Amir_2267 CDS
T00957
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ami
Actinosynnema mirum
Pathway
ami03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ami00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Amir_2267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ami03019
]
Amir_2267
03009 Ribosome biogenesis [BR:
ami03009
]
Amir_2267
Enzymes [BR:
ami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Amir_2267
Messenger RNA biogenesis [BR:
ami03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Amir_2267
Ribosome biogenesis [BR:
ami03009
]
Prokaryotic type
rRNA helicases
Amir_2267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACU36207
UniProt:
C6WIG4
LinkDB
All DBs
Position
complement(2515213..2516898)
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AA seq
561 aa
AA seq
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MTDAPDDDRTSFADLGLRPELLRALSGLGYEEPTPIQREAIVPLTEGRDLLGQAATGTGK
TAAFALPVLERLAQVEKRGDAPFALVLVPTRELAVQVSEAVHRYGRELGARVLPIYGGQP
IGRQLRVLERGVDVVVATPGRAVDHLGRGTLNLEDLQVVVLDEADEMLDMGFAEDLDTIL
AETPKQRQTVLFSATMPPRIDKLARQHLTEPARITINQERAEPGEAPRVRQVAYVVPRAH
KPAALGRVLDVEAPTAAIVFCRTRDEVDQLTETLNGRGYRAESLHGGISQEQRDRVMARL
RNGTADLLVATDVAARGLDVEQLTHVVNYNVPSAPESYVHRIGRVGRAGREGVAITLAEP
REHGMLKTIERVTKQRITMEKVPTVADLRARRLELTRAALHESLLEDELEGFRVVVESLS
DEFDVMEVALAAVKLAHEASGAAADEEEIPEVAHRSDRSRGGVAGSDGQRRERRVRPPTA
GMTRLFVGAGRSSGIRPQDIVGAIAGEARLQGRDIGAIEITDRFSLVEVPESSAQHVITA
LRGATMKGRKVTVRRERDAQR
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcgcccgacgacgacaggaccagcttcgccgacctcgggctccgccccgaa
ctgctgcgggcgctctccggactcggctacgaagaacccacccccatccagcgcgaggcc
atcgtgccgctgaccgaggggcgtgacctgctcgggcaggccgccaccgggaccggcaag
accgccgccttcgcgctgcccgtgctcgaacgcctcgcgcaggtcgagaagcgcggtgac
gcgccgttcgcgctcgtgctcgtccccacccgcgaactggccgtgcaggtctccgaggcc
gtgcaccgctacgggcgcgagctcggcgcccgcgtgctccccatctacggcggccagccc
atcggcaggcagctgcgcgtgctggagcgcggcgtcgacgtcgtcgtcgccacgcccgga
cgcgccgtggaccacctcggccggggcacgctgaacctggaggacctccaggtcgtggtg
ctggacgaggcggacgagatgctcgacatgggtttcgccgaggacctggacacgatcctg
gccgagacccccaagcagcggcagaccgtgctgttctccgccacgatgcccccgcgcatc
gacaagctggcccgccagcacctcacggaacccgcccgcatcaccatcaaccaggagcgc
gccgagcccggcgaggccccgcgcgtgcgccaggtcgcgtacgtcgtgccgcgcgcccac
aagcccgccgcgctcggccgggtgctggacgtggaggccccgaccgccgccatcgtcttc
tgccgcacccgcgacgaggtcgaccagctcaccgagaccctcaacggccgcggctaccgg
gcggagtcgctgcacggcggcatcagccaggagcagcgcgaccgggtgatggcgcggttg
cgcaacggcaccgccgacctgctcgtcgccacggacgtggcggcgcgtggcctggacgtc
gagcagctcacgcacgtcgtgaactacaacgtgccgtccgcccccgagtcctacgtgcac
cgcatcggccgggtcggccgcgcgggccgcgagggcgtggcgatcacgctggccgagccg
cgcgagcacgggatgctcaagacgatcgagcgggtcaccaagcagcggatcaccatggag
aaggtccccacggtggccgacctgcgggcccgcaggctggagctgacccgcgcggcgctg
cacgagagcctgctggaggacgagctggagggcttccgggtcgtcgtggagtcgctgtcc
gacgagttcgacgtcatggaggtggcgctcgcggcggtcaagctcgcgcacgaggccagc
ggcgcggcggcggacgaggaggagatcccggaggtcgcgcaccgctccgaccggagcagg
ggcggcgtcgcggggagcgacgggcagcggcgcgagcgccgggtccggccgccgacggcg
ggcatgacgcggctgttcgtgggcgccgggcgcagctcgggcatccggccgcaggacatc
gtgggcgcgatcgcgggcgaggcccggctgcagggccgggacatcggcgcgatcgagatc
accgaccggttctcgctggtggaggtgccggagagctcggcgcagcacgtgatcacggcg
ctgcgcggcgcgaccatgaagggccggaaggtgaccgtgcggcgggagcgcgacgcgcag
cgctga
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